Panicum virgatum (switchgrass): 120687889
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Entry
120687889 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor RS31-like
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120687889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120687889
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120687889
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RNA_bind
SET_assoc
RRM_3
RRM_5
DUF2129
Motif
Other DBs
NCBI-GeneID:
120687889
NCBI-ProteinID:
XP_039825902
LinkDB
All DBs
Position
9N:81520386..81523575
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AA seq
254 aa
AA seq
DB search
MRPVFCGNFDYDTRQYDLEGLFSKYGPIRRIDMKSGYAFIYFEDERDAEDAIRRLDNVSF
GYNRRRLSVEWSRQVEPVSRSRDRPAGDVKPTRTLFVINFDPIRTKIRDIERHFEPYGKI
TNIRVRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDNERDDRYSSPKRG
GHDRRRASPYMRSPSPRYRRDYSPNYDRRGRYPGYDRRDGVVYDRRSPVYDRYDRGRSPA
YDRYDRRSPGYNQY
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgaggccggtcttctgcggcaacttcgactacgacacgcgccagtacgacctggagggt
ctcttctccaagtacggccccatccgccgcatcgacatgaagtcaggttatgctttcatt
tactttgaagatgagcgcgatgcagaggatgctataaggcgtctcgacaatgtttctttt
ggttataacaggcgcaggctctctgtagaatggtcgaggcaagttgaaccagtgtcaagg
agccgtgataggcctgctggggatgtaaagccaactagaactctctttgttatcaatttt
gaccccatacgcactaaaattcgagatattgagaggcattttgaaccatatggcaagatt
acaaacattcgtgttagaaggaactttgcgtttgtacagtacgagacacaagaggaagct
agtgctgctgtcaagaacactgataagagcacaatattagacagggtggtgacagttgaa
tacgccttccgtgatgatgacaatgaaagagatgacagatacagcagccccaagcgaggt
ggtcatgacaggcgtcgtgctagcccctacatgcgctcacctagcccaaggtaccgaagg
gactacagtccaaattacgatcggcgtgggcgttatcctgggtatgatcgccgtgatgga
gtagtgtatgataggagaagcccagtatatgatcgttacgataggggcagaagccctgct
tatgatcgctatgataggagaagtcctggttataatcaatactag
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