Panicum virgatum (switchgrass): 120687903
Help
Entry
120687903 CDS
T07260
Name
(RefSeq) KH domain-containing protein HEN4-like isoform X1
KO
K21444
poly(rC)-binding protein 3/4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120687903
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
120687903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_5
FYRN
Motif
Other DBs
NCBI-GeneID:
120687903
NCBI-ProteinID:
XP_039825926
LinkDB
All DBs
Position
9N:complement(21723137..21731354)
Genome browser
AA seq
787 aa
AA seq
DB search
MDHDNSRRSHSKKRTHSSFDDGKRKRLNSRHDDTSMSSEPIETIYRILCPVKKIGSVLGR
GGDIVKTLREETKSKIRVADSIPGADERVIIIFNYQNHSERADEAAENISSDGLGSMKPH
CSAQDALLKIHDKIVADEFHDGVANKESESADDVTTRILVQGNQVGCLLGKGGSIIQQLR
NDTGAGIRVLPSENLPQCALKSDELVQITGAPSLVRKALYEISTRLHQHPRKENLPLEEI
IDASTQRKRESPPPLPHGNPLFPHGHIDHPPPIPLLDPYRDGPLRTVADTEEFSIRILCA
SELIGSVIGKSGANVKRVEQQTGARIKVQEVDKDVSGERIIIVSSKEIPADPISPTIEAL
MLLHDKLSALSEKRHVSTRLVVSSSKVGCILGEGGKIITEMRRRTGAEIRVYSKADKPKY
LSFDDELVQVAGPPAIARGALTEIASRLRTRTLRDTSSVNNPPPVNPFHGPPVDLPSREF
TVYGRPAHDPPPYGRPAIDPQSERLTNDPYGRPAIDPPFGRLTNDSPYGRTAIVPPFGRP
TNDPPYGMPANNAPYGQLANDPPYGRASSNVPYGRLNENAPHDPSYSYPVDYFSKREYPH
GSPPIVSNAPSSAYERYAAPARVPTRKLPSSFSPGADYMSHRSYRAHVPIDSYSSRGTQQ
LGITRDGKSNAYDYTEAAGQMHGDHRGQTSVAGRYSSTIELRVPSSSLESIVGVGGVNLA
EIRQISGAKLRLLEGHPGSSESIVEIQGTLDQAKAAQSLLEGFISANSRSTQQQPQPSRM
PLYPSWG
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggatcatgataattctagaagaagtcactccaaaaagaggacacattccagttttgat
gatggaaagaggaaacggttaaactccaggcatgatgacacatctatgtcctctgagcca
attgaaaccatttacaggatattgtgcccggtaaaaaagataggcagtgtcttggggaga
ggtggtgacattgttaaaacccttagagaggaaacgaaatcaaagataagggttgctgat
tccattcctggtgcagatgagagagtaattatcatcttcaactaccagaatcattctgaa
cgagctgatgaagcagctgaaaatatatctagtgatggcttagggagcatgaagccccat
tgttctgcccaagatgccttattgaagatacatgataagattgtggcagatgaatttcat
gatggagttgccaacaaagagtctgaaagtgctgatgatgtgactacacggattttggtt
caaggcaatcaagttggctgccttctaggaaaaggtggctccattatacaacaactgcga
aatgatactggtgcagggatccgtgtcttaccatctgaaaaccttccccaatgtgcactt
aaaagtgatgagctagtgcagataactggagcaccttctcttgtaagaaaagctctctat
gaaatatctactcgtctccatcaacatccacgtaaagaaaacctacctctggaggaaata
atagatgcaagcacacaaaggaaacgcgagtctccaccaccattaccacatggaaaccca
ttgttcccacatgggcatattgatcatccaccacctatacccctgcttgatccatataga
gatggaccattgcgaactgttgctgatactgaggagttttctatcagaattctgtgtgcc
tctgagctcattggttcagttattgggaaaagtggggctaatgttaagcgggtagagcag
cagactggtgctcgcattaaggttcaagaagttgacaaagatgtttctggagaaaggatt
attattgtttcatctaaggagataccagctgatccaatatccccaacaattgaggcactc
atgttgctccatgataaactaagtgcactctctgagaaacgccatgtgagtacaaggctt
gttgtatcatcaagcaaagttggctgtattcttggggaaggtgggaagataattactgaa
atgagaaggcgaactggtgcagaaattcgagtttactcaaaggcagataaaccaaagtac
ttgtcctttgatgacgagcttgtgcaggttgctgggcctccagctattgcaagaggagcc
ctcacagagattgcttcgagacttagaactaggactttgagagatacaagttctgtcaat
aaccctccacctgtcaacccttttcatggtcctcctgttgatttgcctagcagagaattc
acagtatatggaaggcccgcccatgatccaccaccatatggaaggcctgccattgatccg
caatccgaaagactcaccaatgatccatatggaaggcctgccatagatccaccatttgga
agactgaccaatgattcaccatatggaaggactgccattgttccaccatttggaagacct
accaatgacccaccatatggaatgcctgccaacaatgcaccatatggacaacttgccaat
gatccaccatatggaagagcttccagtaatgtaccgtatggaagactgaacgaaaatgca
cctcatgatccttcctattcatatcctgtagactacttctctaaaagagaatatccccat
ggaagccctccaattgttagtaatgcaccatcatctgcttatgagagatatgcagcgcct
gctcgtgttcctactagaaaacttccctcctctttcagtcccggtgcagattatatgtca
catcgttcttaccgtgcccatgtgcctattgatagctactctagtaggggcacacagcaa
ttaggcatcacaagagatggaaagtcaaatgcttacgactatactgaggctgctgggcag
atgcatggcgatcatcgaggacagacaagtgttgctggcaggtactcaagcactattgaa
ctgagggttccaagtagttccttggaatctattgttggagttggcggggtcaatctagca
gagatccgtcagatttccggtgccaaactgaggctacttgaagggcatcccggttcttcc
gagtcaatagtggagatccagggcacgctggaccaagcgaaagctgcgcagagcctcctg
gagggcttcattagcgcgaacagccggagcacgcagcagcaaccccagccttcccgcatg
ccactttacccaagctggggctag
DBGET
integrated database retrieval system
