Panicum virgatum (switchgrass): 120687912
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Entry
120687912 CDS
T07260
Name
(RefSeq) transcription factor bHLH140-like
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120687912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120687912
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
120687912
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
120687912
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
120687912
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
120687912
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120687912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
Zeta_toxin
AAA_29
AAA
nSTAND3
AAA_25
KTI12
ABC_tran
AAA_16
AAA_19
SMC_N
AAA_17
NACHT
AAA_22
AAA_30
AAA_28
NB-ARC
AAA_24
AAA_5
Motif
Other DBs
NCBI-GeneID:
120687912
NCBI-ProteinID:
XP_039825936
LinkDB
All DBs
Position
9N:complement(68307928..68320479)
Genome browser
AA seq
781 aa
AA seq
DB search
MNPDGGGSSSSPPPPSPSRGADAEAKEEEHGRKQVVVVLVGPPGSGKSTFADAVVAGSTA
GRSWVRICQDTIGNGKAGTKIQCLKATSDALKEGKSVLIDRCNLEREQRADFVKLSSTLH
VDVHAVALDLPAKVCISRAVSRKGHEGNLQGGKAALVVNRMLQKKETPLLTEGFSRIMSC
NDDGDIKKAVDMYNALGPSDCLPSGIFGQKSKGPIQVGIMKFLKKSDTSSVEKSSGPKIT
LSESKPEQQNPLAKHEKVEDGMSCPMEVEKGLNDKNENEKHAKECDSDDVGSCTLAFPSI
STADFQFDLDRASDIIVDTAADFLQKFDNIRLVLVDLSEKSRILSLVKEKASKKSIDCSR
FFTFVGDITQLHTKGGLRCSVIANAANWRLKPGGGGVNAAIFSAAGESLHHATKKCADAL
RPGTSVVVPLPSISPLHQREGVTHVIHVLGPNMNPMRPDYLKNDYIKGSKILREAYNSLF
ENFASIVRGHMGKQNGKLGAEMSASGGTSPNDTKMKREDSHGSERMKKHKLLPPIMTAKQ
QHEHTKANTPNYHDKSMTSSAAPNQAREGDTKKSGVVASKTWGSWARTLYELAMHPEKYK
NTDSILETSDEFIVLKDLYPKAKKHVLVISRTDGLDSLADVKKEHLPLLRRMHSAGVKWA
HKFLEEDASLVFRLGYHSVPSMRQLHLHIISQDFDSTSLKNKKHWNSFTTPFFRDSVDVI
EEIEQHGSATANSDEKILAMELRCHRCRSAHPNIPKLKSHIANCKSSFPSHLLQKNRLVS
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgacggtggcggctccagttcatccccgccacctccgtccccaagccgaggc
gcggacgcggaggcaaaggaggaggagcacggccgcaagcaggtggtggtggtgctggtg
ggcccgccgggcagcggcaagtccacgttcgccgatgccgtcgttgccggctccaccgcc
ggccgctcgtgggttcgcatctgccaggatacaattggaaatggtaaagctgggacgaaa
atacagtgcttgaaggctacatctgatgctttgaaggagggcaagagtgttctcattgac
cgctgcaacttggaacgagagcagcgcgctgactttgtgaagctgagcagcacattgcat
gtggatgtgcatgctgtagccctggatttacctgctaaggtctgtatctcgcgtgcagtg
agccgtaagggccatgaaggaaatctgcagggtggaaaggccgcccttgttgtgaaccgg
atgctgcagaagaaggaaacacccttgctgacagaaggtttcagtaggatcatgtcctgt
aatgatgatggtgacattaaaaaggcagttgatatgtataatgctttagggccttcagat
tgtcttccatcaggaatttttggtcagaagagcaaaggacccatacaagttggtataatg
aagtttctaaagaagagtgatacttccagtgttgagaaatccagtggacccaagattaca
ttgagtgaaagcaagccagagcagcaaaaccctttagcaaaacatgaaaaggttgaagat
ggtatgtcctgcccaatggaagttgagaaggggttgaatgacaagaatgaaaatgaaaag
catgctaaagaatgtgattctgatgatgttggttcctgcactctggcatttccatctatt
tctactgctgacttccaatttgatcttgacagagcatctgacattatagtagacacagct
gctgatttcttgcagaaatttgataatatcagactagttcttgtagacctgagcgagaaa
tcaagaatattatcattggtcaaagagaaggcttctaaaaagagcattgactgcagcagg
tttttcacattcgtgggagatatcactcagttgcacacgaaaggaggtcttcggtgcagc
gtgattgctaatgctgctaactggaggttaaagcctggaggtggaggggttaacgctgct
atattcagtgctgctggagaatctttacatcatgcaaccaaaaaatgtgctgatgcactg
aggccaggaacctctgttgttgttccacttccatcaatttctcctctgcatcaacgagaa
ggtgtgacccatgtcatccatgtgcttgggccaaatatgaacccgatgcggccagattat
ctgaagaatgattatatcaaagggtctaagattcttcgtgaagcatacaattcgcttttt
gagaattttgcatccattgtccggggccacatgggaaagcagaacggaaagttgggggca
gaaatgtcagcatctggagggacatcacccaatgacacaaaaatgaagcgtgaggacagc
catggatctgaaaggatgaaaaaacataagttgcttccacccatcatgactgcaaagcaa
cagcatgagcatacgaaggctaacacgccaaattaccatgataagtctatgacttcatct
gctgctccaaaccaagctagggaaggagacacaaaaaagagtggcgtggtcgccagtaag
acttggggatcatgggcccggaccctttatgaacttgccatgcacccagagaaatacaag
aacacagattctatcctggagacatctgacgaatttattgttctgaaagatctctatcca
aaggctaaaaagcatgttttggtgatatctaggacagatggtcttgactccctagcagat
gtcaaaaaagaacacttgcctttgctgaggaggatgcattcagctggggtgaaatgggca
cataagttcctggaggaagatgcatctttggtattcaggcttggataccactcggttcca
tctatgcggcaactgcatcttcacattattagtcaggattttgattccacgagcttgaaa
aataagaagcattggaactccttcaccacaccgttttttcgtgattctgttgatgtcatc
gaggagattgagcaacatggatcagcaaccgccaacagtgatgaaaagatactggcaatg
gaacttcggtgccacaggtgcaggagcgcgcatccaaacatcccaaagctgaaatcccac
atcgcgaactgtaaatcttccttcccttcgcatcttctgcagaaaaacaggttggtatct
tcgtag
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