Panicum virgatum (switchgrass): 120687948
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Entry
120687948 CDS
T07260
Name
(RefSeq) soluble starch synthase 2-1, chloroplastic/amyloplastic-like isoform X1
KO
K00703
starch synthase [EC:
2.4.1.21
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00854
Glycogen biosynthesis, glucose-1P => glycogen/starch
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120687948
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pvir01003
]
120687948
Enzymes [BR:
pvir01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.21 starch synthase (glycosyl-transferring)
120687948
Glycosyltransferases [BR:
pvir01003
]
Polysaccharide
Storage polysaccharide
120687948
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_transf_5
Glyco_trans_1_4
Glycos_transf_1
GT4-conflict
Glyco_transf_4
Motif
Other DBs
NCBI-GeneID:
120687948
NCBI-ProteinID:
XP_039825979
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All DBs
Position
9N:complement(27321371..27345362)
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AA seq
798 aa
AA seq
DB search
MASSTFLVGPAVLRPRGASPPAACGGCCRRSCSAPRASARAPSRRRRSPPCAHPVRLRVS
AGAGWPVVLRGSSSRGLEKGLSAAATDAEASGQVGDDDEDMARVTNEALRATIRKSKEVL
ARHKIILEQCMLMLYCLLYYMMVWMMICRQLIQISEKKKLISVLAESSIHNEQKPHSGQS
DSSFSNLNAVSEGEEIDYGRQTYFATHAQQSEFDTTYGESIYDQSEYYGSVEDEDTDFNR
SFGEDNYGKYYQYDSFPRAAPSIYQPEAANGMDHHFVAQISEASEKDQSVNEGANGNPAA
SGDVGVMNVILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVVPKYGDYKEPQEIG
EPRRYQIAGQDMEVKYYHAYIDGVDFVFIDNPIFHHVESEIYGGNRTDILKRMVLLCKAA
IEVQWYVPCGGYCYGDGNLLFIANDWHTALLPVYLKAYYRDNGFMTYARSVLVIHNIAHQ
GRGPIDDFNYLDLPGHYMDQFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTPD
GGWGLHSIIGENDWKFQGIVNGVDTTDWNPRHDVHLQSDGYTNYSLETVQTGKTQCKEAL
QKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRR
LESQHYDRVRGWVGFSVQLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTIPVVHAVGG
LRDTVQHYNPYEEVGVGWTFEKAEANRMIDALGHCLNTYRNYRSSWEGIQRRGMMQDLSW
DNAAKLYEEVLVAAKYQW
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggcgagttccaccttcctcgtcggccccgcggtactgcgcccccgcggcgcctctcca
cccgcggcctgcggcggctgctgccgccgcagttgctccgctccgcgcgcgtcggctcgc
gccccaagccgccgccgccgcagcccgccgtgcgcgcacccggtgaggttgcgcgtcagt
gctggtgctgggtggcccgtggtgctcaggggatcgagcagccgggggcttgagaagggt
ttaagtgctgcagcgacggatgctgaagcttctggtcaagttggcgatgacgacgaggat
atggcccgtgtcaccaatgaggcgcttcgcgccaccatccgcaaaagcaaggaagtcttg
gcgaggcacaagattatactggagcagtgtatgcttatgttgtattgtttattgtactat
atgatggtttggatgatgatatgtcggcaacttattcagatatcggaaaagaagaagctc
atctcagttctagcggaaagttccattcataatgaacaaaaaccacatagtggtcagagt
gatagttccttttcaaacctgaatgcagtatcagagggtgaagagattgactatggccgt
caaacttactttgctacgcatgcacaacaatctgaattcgacacaacttatggggagtcc
atctatgatcagagtgaatactatggaagtgtagaagatgaagatactgattttaacaga
tcatttggtgaggacaactatggcaaatattatcagtatgacagttttcctagagctgct
cccagtatatatcaaccagaagctgccaatggtatggatcatcattttgtggcacaaata
agtgaagcaagcgaaaaagaccagtcagttaatgagggagcgaatggcaatcctgctgct
tcaggtgacgttggcgttatgaatgtcatattggtagccgcagagtgtgctccttggtcc
aaaacaggtgggcttggggatgttgctggagctttgcccaaggctttggctaggagaggt
catcgcgtcatggtagtagttccaaagtatggtgactataaggaaccacaagagatagga
gagccaaggaggtatcaaatcgcagggcaggatatggaggtaaagtattaccatgcatac
atagatggtgtggattttgttttcatcgacaatcctatcttccaccatgttgagagtgaa
atttatggtggaaaccgaactgacatcttgaaacgaatggttttgttgtgcaaagcagct
atagaggttcaatggtatgttccatgtggtggctattgctatggtgatggaaatcttctg
ttcattgcaaacgattggcatactgcattactgcctgtttatctgaaggcatactaccgc
gacaatggttttatgacctatgcccgttctgttcttgtgatacacaacatagcacatcag
ggtcgtggcccaatagatgacttcaattacctggatttgccaggtcattatatggatcaa
ttcaaactctatgacccatttggaggtgatcatctaaacatttttgcagctggtattaaa
gctgctgaccgtttgcttactgttagccatgggtatgcatgggagcttaaaacacctgat
ggcggttggggccttcatagcatcattggtgaaaatgattggaaattccagggtattgta
aatggtgttgatacaacagattggaatcccaggcatgatgtccacctacaatctgatggg
tacaccaactattctttagaaacggttcagacaggcaaaacacaatgtaaggaagcattg
cagaaagagcttggcctcccagttcgtggtgatgttcctgtcattgctttcatagggcgg
ttagaccatcagaaaggtgtagacctgatcgcagaagcaatgccgtggattgctggccaa
gatgtacagttaattatgctgggtactggaagacaagaccttgaagataccttgaggcga
ctcgagagccagcattatgacagggttaggggctgggtcggtttttctgtccagttggct
catcgtatgactgcaggggctgatatactgttaatgccatcaaggtttgagccttgtggg
ctgaaccagctatatgccatgatgtacggcactatcccggtggttcatgcggttggaggt
ctccgagacacagtccagcattataatccctatgaggaggttggagttggttggactttt
gaaaaggcagaggcaaacagaatgattgacgcactagggcactgcctgaacacatacaga
aattacaggagcagttgggaaggcatccaaaggagaggaatgatgcaagatctaagctgg
gacaatgctgctaaactctatgaggaagttctcgttgctgccaagtatcagtggtga
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