Panicum virgatum (switchgrass): 120687974
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Entry
120687974 CDS
T07260
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120687974
09122 Translation
03013 Nucleocytoplasmic transport
120687974
03015 mRNA surveillance pathway
120687974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120687974
03041 Spliceosome [BR:
pvir03041
]
120687974
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
120687974
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
Cap binding complex
120687974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
DUF5742
RPW8
Phage_lysis
Motif
Other DBs
NCBI-GeneID:
120687974
NCBI-ProteinID:
XP_039826024
LinkDB
All DBs
Position
9N:complement(64063439..64079671)
Genome browser
AA seq
867 aa
AA seq
DB search
MSAGWRTLLLRIGDRCPEYGGSADHKEHIETCYGMISREYEHSREAIFEFLLQCAEQLPH
KIPFFGVLIGLINLENEDFAKDIVDTTQAKLQDALHNENRDRIRILLRFLSGLMCSKVVV
PNSIIETFETLLSSAATILDEETGNPSWQPRADFYVYCILASLPWGGPELFEQVPDEFER
VLVGIQSYISIRRHFDDIAFSVFETDEGHSPNKKDFMEDLWERIQILSRSGWKAKSVPKP
HLPFEAQLVAGKSHRLSLISCPPPNLTLTSSEILRGQEKHEADLKYPQRLRRLHIFPTNQ
AENMQPVDRFVVEECILDVLLFFNGCRKECAFYLVSLPVSFRYEYLMAETIFSQLLLLPN
PPFRPIYYTLVIIDLCKALPGAFPSVVVGAVHALFDRISNMDMECRTRLILWFSHHLSNF
QFIWPWQEWSYVKDLPKWAPQRVFVQEVLEREIRLSYFEKIKQSIEDAAELEELLPPKAG
PNFKFLSDESTENTDGHKLSKELVAMVRGKKNVRDIILWVEEHVIPTNGAEFALDVVSQT
LLDIGSKSFTHLITVLERYGQIISKLCPNEEMQLLLMDEVSAYWKNSTQMTAIAIDRMMG
YRLISNLAIVKWGFSPANVEQFHVSDRPWEILRNAVSKTYNRISDLRKEIQSLKKGLQVA
KEVSAKAIKELEEAKSVLEIVEGQPAPAERPGRLRRLQVHADKAKEEEVTTEESLEAKGA
LLARALEENKELLKLLFKRFVDVLTERLPAVSADGEIPNLRAGYQNVNFASQDLETATME
IDNENGADKNSEPNGQNTKNDYNVGELEQWCLCTLGYLKSFSRQYATEIWSHIAMLDEEV
FVGDIHPLIRKAAFSGLCRFTNEGSQL
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgggctggaggacactgctgctgcgcatcggcgacaggtgccccgagtacggg
ggatccgcagaccacaaggagcacatcgaaacttgttatggcatgataagtcgagaatat
gaacattccagagaggctatatttgagttcctccttcagtgtgcagaacaactgcctcac
aagattcctttctttggagttttgattggtctgatcaacttagaaaatgaagattttgcc
aaggatattgtagataccacacaggccaaactacaggatgccttgcacaacgaaaatcgt
gatagaattaggatattgctgcgatttctcagtggcctgatgtgcagcaaagttgtagtt
ccaaattcaatcattgagacatttgagactctattatcatctgctgcaacaatattagat
gaggagactggaaatccttcatggcaaccacgtgctgacttttatgtttattgtattttg
gcttcccttccatggggtggtccggaattgtttgagcaagttccagatgagtttgagaga
gttttggttggtatacagtcttacataagtatcagaaggcattttgatgatattgctttc
tctgtctttgagacagatgaaggccactctcctaacaaaaaggatttcatggaagatcta
tgggagcgcattcaaattctttcccgcagtggatggaaagctaaaagtgttccgaagccc
cacttgccatttgaagctcagctggtggctggaaagtcacatcgtctttctctgattagt
tgccctccgcctaatctcacgctgacttcttctgaaatattaagaggacaggaaaaacat
gaagctgatctgaagtatcctcaaaggcttcgtagactccatatctttccaacaaatcaa
gctgagaatatgcagcctgtagatcgttttgttgttgaagaatgcatattggatgtgcta
cttttcttcaatggctgtcggaaagaatgtgcgttttatctggtcagtcttcctgtctct
tttagatatgagtacctgatggctgaaaccatattctcacagctactattgttgccgaat
ccacctttcaggccaatttattatacattggttatcattgatctttgcaaggctttgcca
ggtgcattcccttcagttgtggttggagctgtgcatgctctttttgacagaattagtaac
atggacatggagtgtcgcaccaggcttatcctatggttttcacaccacctgtcaaacttt
caattcatttggccttggcaagagtggtcttatgtcaaggacctcccaaagtgggctcca
caacgggtttttgtccaagaagtgttggaaagggaaatccgcttgtcctactttgaaaaa
atcaaacagagtatcgaggatgctgctgagttagaagaactgttacccccaaaagctggc
cctaatttcaaattccttagtgatgaaagcactgaaaacacggatggccataagctatca
aaggaacttgttgccatggttagaggaaagaagaatgttcgtgatattattttatgggtg
gaggaacatgtaattccaacaaatggtgctgaatttgccctcgatgttgttagccagaca
cttcttgacattggatcaaaaagtttcacccatctaatcactgttttggagagatatggt
caaataatctctaagctatgtccaaatgaggaaatgcagttattgttgatggatgaagtc
agtgcttattggaagaacagtactcagatgactgctatagctattgacagaatgatgggt
tatcgtctgatatcaaatttggctattgttaaatggggtttttctccagccaatgttgag
caattccatgtttctgatcgcccatgggagattctcagaaatgccgttagtaaaacatac
aatcggatcagtgacctccggaaggaaattcagtcactcaagaaaggtcttcaagttgct
aaggaggtcagtgcaaaagccataaaggagcttgaggaggctaaatcagtacttgagatt
gtagaggggcaacctgcaccagctgaaagaccaggtaggctaaggcggctccaagtacat
gctgacaaggcaaaggaagaggaagtaactacggaagaatctttagaagcaaagggagct
ctccttgctcgggctctcgaagaaaacaaggaattgcttaaattactatttaagaggttt
gttgatgtgcttactgaacgtttgccagctgtctctgctgatggagagatccctaatctt
cgcgctggatatcaaaatgtaaattttgcgtcccaagatcttgaaacagcaacaatggag
atagacaatgaaaatggagcagataaaaatagtgaaccaaatgggcaaaacacaaaaaat
gactacaatgttggagagctcgagcaatggtgtctttgtacactgggttatctcaagtca
ttttctcgccaatatgcaactgagatttggtctcacatagcaatgttggatgaggaggtc
ttcgttggggacattcaccctcttatccggaaagctgctttctctggtttgtgcagattt
accaatgaaggttctcaactttaa
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