Panicum virgatum (switchgrass): 120687978
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Entry
120687978 CDS
T07260
Name
(RefSeq) vacuolar-sorting protein BRO1-like
KO
K12200
programmed cell death 6-interacting protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03250
Viral life cycle - HIV-1
pvir03272
Virion - Hepatitis viruses
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120687978
03272 Virion - Hepatitis viruses
120687978
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120687978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120687978
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120687978
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
120687978
Exosome [BR:
pvir04147
]
Exosomal proteins
Proteins found in most exosomes
120687978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
iSirtuin
PAXX
Motif
Other DBs
NCBI-GeneID:
120687978
NCBI-ProteinID:
XP_039826028
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All DBs
Position
9N:21715447..21721978
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AA seq
870 aa
AA seq
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MASAAGSSNVMLAIHEKKTTPTDLYRPLRLYIASAYSEREAAAADDDLSAVRDLRAAVEQ
PSLPDPSSLEQRRDALLAYARALALVEPRFPISPDRAHVHSLTFTWHDAFKGNKKCALAS
IHLEKAAVLFNLGAVYSQIALAADRSTDVGIRTACGAFQSAAGAFAWLRESGVAAKVVAA
GATTVDVTPECAGMLEKLMLAQAQECFFEKVIAGGKPPALCSKVARQVGIFYEEAYAALS
APPLSQHFDKTWVSHVQLKAAQFYADACYRYSLDLHEKEEIAEEIARLKIGMSALADAKK
AAKGVAAQLLDSVNKLESNMKTNLERAMKENDRVYLMRVPAAGSLGALPAASLVKPTSLA
EVLDASKERLFSSLVPDGSMKALSKYTEMVDNIIRTQAEKLQQASEITRVRLKEMDLPDS
ILSLEGSITLPVDLKEDVEAVQISGGPAGLESELQQLRDLRRVNQELLVQTEELLQKEAN
EDAQFRTQFGSRWTRPQSSTLTKNIQDRLNLFAANLKKAADSDSLIERGVKESYPLMSIL
DKRPIESALPSISRPIMSLDGNEDAIVGALKQSLRQLEFLGAQRAGLEDMLKEMKRKDDI
LPKLMAGVGSHDDLFKKEIAKYDSICAEIADNIVAQEQLLLQIQAQNEQFATVFNLEDYK
AARERCYKQIAAAVAKYREIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMI
EDVQRKLAGFNFSSSSHSSMQRNASVPPDQSSPSPPPHAQAPYAAPPGVDSRPGYSQPEP
RPAYSQPYPPSYGAPPQQPPYGAPPPGQYQQPPHQLAPGHDYSQPAYPGWRGPYYNAHQP
QPQQPGPYPQPPYNAPGAYPPHQSNYYRPQ
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcggcggggtcctccaacgtgatgctcgcgatccacgagaagaagacaacc
cctaccgacctctaccgcccgctccgcctctacatcgcctccgcctactcggagcgcgag
gccgcggcggccgacgacgacctcagcgcggtgcgcgacctccgcgccgcggtcgagcag
ccctccctcccggacccgtcctccctcgagcagcgccgggacgcgctcctcgcctacgcg
cgggcgctcgcgctcgtggagccccgcttccccatctcccccgaccgcgcccacgtccac
tccctcaccttcacctggcacgacgccttcaaggggaacaagaagtgcgccctcgcctcc
atccacctcgagaaggccgccgtgctcttcaacctcggcgccgtctactcccagatcgcg
ctcgccgcggaccgctccaccgatgtcgggatcaggaccgcgtgcggcgcgttccagagc
gcggccggggcattcgcgtggctcagggagagcggggtcgcggccaaggtcgtcgccgcg
ggggctaccaccgtcgacgtcacgcctgagtgtgcaggcatgctggagaagctcatgctc
gcgcaggcgcaggagtgcttcttcgagaaggttattgctggagggaagccgcccgcgctg
tgctccaaggtggcgcggcaggtgggcatattctacgaagaagcatatgcagctctcagt
gcacctcctctaagtcagcacttcgataagacatgggtgtctcatgtccagctgaaggca
gctcaattctatgctgatgcttgttatagatattcacttgatcttcatgagaaagaagaa
attgctgaggaaattgcacggttaaagattggaatgagtgccttggcagatgctaagaag
gctgcaaagggagttgctgcccagcttctggattctgtcaacaagctggaaagcaacatg
aaaaccaacttggaaagggctatgaaggagaatgatcgtgtttacctgatgcgggttcca
gctgctggttccttgggtgccctccctgcggcatcccttgtaaagcctacctctctggct
gaagttttagatgccagcaaggaaaggcttttttcatcgcttgtgcctgatggcagcatg
aaagcactttccaagtacacggagatggtagataatattatccggacccaggcagagaaa
ttgcagcaagctagtgagatcactagagtcaggttgaaggaaatggacttaccagattct
atcctttcactggaaggaagtataacattacccgtcgatctgaaggaagacgtagaggct
gtgcagataagtggtggacctgctggcttggagtccgagttgcagcagcttagggatttg
aggagggtcaatcaggaactacttgttcagactgaggagcttctgcagaaggaggcgaat
gaagatgcacaatttcgtacgcaatttgggagtcgttggactagacctcaatcaagcacc
ctaactaaaaacattcaggatcgattgaatctatttgctgctaatcttaagaaagctgct
gatagtgactctttgatcgaacgaggcgtgaaggagagctatcccttgatgtctattctt
gacaaacgaccgatagagtctgcacttccaagtatttctaggcctatcatgtccttggat
gggaatgaagatgccattgttggagccctgaaacaaagcttgagacaactggaatttctt
ggagcacaaagggcaggtcttgaagacatgctcaaagagatgaaaagaaaggatgatata
ctgcctaagttaatggctggtgttggatcacatgacgatcttttcaagaaggagattgct
aagtatgattctatctgtgctgaaattgctgataacattgtggcacaggaacaattattg
ctgcaaatacaggcacaaaacgagcaattcgctactgtattcaatctagaggattacaaa
gctgctcgtgagagatgttacaagcaaattgctgctgctgttgctaaataccgggagatt
aagaagaacatcaatgagggcctaaacttttatgtgactttacaggaagcaataggcaaa
ataaaacagcagtgcagtgactttataatgacccgaaacattcaatgccgcgaaatgatt
gaagatgtgcagaggaagctagcgggtttcaacttctcatcctccagccactcgtctatg
cagaggaatgcttctgtaccgcctgatcagagcagtccatcaccaccaccccatgctcag
gccccctatgctgctccacctggggtcgactctaggcctggatactctcaaccggagcca
agacctgcatactcacagccataccccccatcctatggtgcaccaccgcaacagccccca
tatggtgcgccaccccctggtcagtaccagcagccaccgcaccagctggctcctggtcac
gactacagtcagccggcatatcctggatggcgtgggccatactacaacgcccatcagccg
cagccacagcaaccagggccatatcctcagccaccttacaatgccccaggggcttaccct
ccccaccagagcaactactataggcctcaatga
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