Panicum virgatum (switchgrass): 120687999
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Entry
120687999 CDS
T07260
Name
(RefSeq) trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like
KO
K12450
UDP-glucose 4,6-dehydratase [EC:
4.2.1.76
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00541
Biosynthesis of various nucleotide sugars
pvir01100
Metabolic pathways
pvir01250
Biosynthesis of nucleotide sugars
Module
pvir_M01021
UDP-L-Rha biosynthesis, UDP-Glc => UDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
120687999
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.76 UDP-glucose 4,6-dehydratase
120687999
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
NAD_binding_4
NAD_binding_10
NmrA
Motif
Other DBs
NCBI-GeneID:
120687999
NCBI-ProteinID:
XP_039826053
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All DBs
Position
9N:complement(69340539..69344079)
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AA seq
673 aa
AA seq
DB search
MATYEPKNILITGAAGFIASHVANRLVRNYPHYKIVVLDKLDYCSSLKNLNPSRPSPNFK
FVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV
TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP
VITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFEVVLH
KGEVGHVYNIGTVKERRVIDVAKDICRLFGLDTEKVIRFVENRPFNDQRYFLDDQKLKRL
GWAERTPWEEGLKKTIEWYTTNPDYWGDVSGALLPHPRMLMTPGVDERHNWTEEIKSISS
SPVEASTTAPATNTQSTTDAPQKHPYKFLIYGRTGWIGGLLGKICEKQGIPYEYGKGRLE
ERSQLLEDIRNVKPTHVFNAAGVTGRPNVDWCETHKQDTIRTNVVGTLNLADVCREQGLL
MINYATGCIFEYDAKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKDYDNVCTLRVR
MPISSDLSNPRNFITKIARYDKVVNIPNSMTILDELLPISIEMAKRDCRGIWNFTNPGVV
SHNEILEMYKKYINPEFKWTNFTLEEQAKVIVAPRSNNEMDASKLKAEFPELLSIKDSLI
KNVFEPNRKVPSS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctacgagcccaagaacattctcataaccggcgctgctggtttcattgcatca
catgtggcaaaccgcctggttaggaactatccacactataagattgttgtcctcgacaag
cttgactactgctccagcctaaagaacctcaacccttcacggccttcaccaaatttcaag
tttgtcaagggtgacattgcaagtgctgatctggtcaactaccttctgatcacagagtcg
attgacaccatcatgcattttgctgctcagactcatgtggataattccttcggcaattca
tttgagttcacaaagaacaatatatatggtacccacgtcctgctggaggcttgcaaggtt
actggtcagatcaggaggtttattcatgtcagtactgatgaggtgtatggagaaactgat
gaggatgctgtggttggtaaccacgaggcatcacaactgcttccaacaaatccttattca
gctacaaaagctggggctgaaatgcttgtgatggcatatggaaggtcttatggtcttcct
gtgattaccactcggggtaacaatgtgtatgggccaaatcagttccctgagaagctcatt
cccaaattcattcttttggccatgagaggtctacctcttcctattcatggagatggttcc
aatgtcaggagctacctgtactgtgaggatgtggctgaagcttttgaggtggttcttcac
aaaggagaggttggacatgtgtataacattggtactgtgaaggagaggagggtgattgat
gtggccaaggacatatgcaggctctttggcttggatactgagaaagtcatcaggtttgtt
gagaacaggcccttcaatgaccagaggtacttcttggatgatcagaagctgaagagattg
ggatgggcagagcgcacaccatgggaagagggattgaagaaaacaattgagtggtatacc
accaatcctgattactggggagatgtcagtggtgcactgctccctcatccaaggatgctg
atgactcctggtgttgatgaaagacataactggactgaggaaatcaagtctatatcttct
tcaccagtggaagctagcacaacagctcctgcaaccaatacccaaagcaccaccgatgcc
cctcaaaagcatccctacaagttcttaatatatggtaggactggatggattggtggcctc
cttgggaagatttgtgagaaacaagggataccatatgagtatgggaaaggacgcttggag
gagcgttctcagcttttggaggacattagaaatgtgaagccgactcatgttttcaatgct
gctggagtcactgggagaccgaatgttgactggtgcgagacccacaaacaagacactatc
cgcaccaatgttgtaggcaccttgaatcttgcagatgtttgtcgtgagcagggtttgctc
atgatcaactatgctacaggctgtatatttgagtacgatgctaagcaccctgaagggtct
ggaatcggctttaaagaggaagacacacccaactttacaggttccttttattccaaaact
aaagcgatggtggaagaactattgaaggactatgataatgtctgtactcttagggtaagg
atgcctatatcatcagacctaagcaaccctcgtaacttcatcacaaagatagctcgttac
gacaaggtggtgaacattcccaacagcatgacaattttggatgagcttctgcctatctcc
atcgagatggcgaagcgggactgcaggggcatatggaacttcaccaaccctggtgttgtc
agccacaacgagattctggagatgtacaaaaagtacatcaatcctgaattcaagtggacc
aacttcaccctggaagagcaggccaaggtcatagttgcacctaggagcaacaatgagatg
gacgcatctaaattgaaggctgagttccctgagctgctatccatcaaggattctttgatc
aagaatgtctttgagccaaacaggaaggtcccttctagctga
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