Panicum virgatum (switchgrass): 120688041
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Entry
120688041 CDS
T07260
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120688041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120688041
03009 Ribosome biogenesis [BR:
pvir03009
]
120688041
04131 Membrane trafficking [BR:
pvir04131
]
120688041
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120688041
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120688041
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
120688041
Membrane trafficking [BR:
pvir04131
]
SNARE
SNARE associated proteins
Others
120688041
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120688041
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120688041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
CDC48_N
AAA_2
AAA_16
AAA_33
AAA_5
AAA_14
AAA_22
TIP49
NPHP3_N
AAA_17
RNA_helicase
nSTAND3
AAA_28
Mg_chelatase
CDC48_2
Parvo_NS1
ATPase_2
AAA_18
ABC_tran
IstB_IS21
Viral_helicase1
AAA_7
NB-ARC
AAA_24
TsaE
Vps4_C
NACHT
Zeta_toxin
ResIII
DUF815
Bac_DnaA
Rad17
Motif
Other DBs
NCBI-GeneID:
120688041
NCBI-ProteinID:
XP_039826104
LinkDB
All DBs
Position
9N:complement(79519005..79521425)
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AA seq
752 aa
AA seq
DB search
MEKLSIYRGDVVLLKGKRRRDTVCMALPDDECGEGKILIGKVARSNLRVRLADVVSVHPC
HDARYGARVHVLPLDDTVEGLSGDLFEAYLKPYFVDAYRSVRKGDLFLVRGGMRSVEFKI
VDIDPAVEYCIVANDTELFCDGEPVRREDEDRLDGVGYDGVGGMRKQLAQIRELVELPLR
HPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKMAGESESN
LRKAFEEAEKNAPSIIFIDEIDSIAPNRDKTHGEVERRIVSQLLTLMDGLKARAHVIVMG
ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRVHTKNMKLADDVDLDVVAKDTHG
YVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVVSSMAITNDHLNTALAGTNPSALR
ETLVEVPNVSWADIGGLEGVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT
LLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKARQSAPCVLFFDELDSIAMR
RGGSAGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYI
PVPDEASRHQIFKACLRRSPVASDVDLAALARFTAGFSGADITEICQRACKYAIREDIEK
DMERERQAKERPDDMAVDCAEEPAQIKAVHFEESMRFARRSVSDADIRKYQAFAQTLQQS
RGFGSEFRFPKQPQAAEPAATANADDEDDLYN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctctccatctaccgcggcgacgtcgtcctgctcaagggcaagcgccgccgc
gacaccgtctgcatggccctgccggacgacgagtgcggcgagggcaagattctgatcggc
aaggtggcccgctcgaacctccgggtgcgcctcgccgacgtcgtgtccgtgcacccgtgc
cacgacgctcggtacggggcgcgcgtccacgtcctccccctcgacgacaccgtcgagggc
ctctcgggggacctctttgaggcctacctcaagccctacttcgtcgacgcgtaccgctcc
gtccgcaaaggcgacctcttcctcgtgcgcggcggcatgaggagcgtcgagttcaagatc
gtcgacattgaccccgccgtcgagtactgcatcgtcgccaacgacacggagctcttctgc
gacggcgagcccgtcaggcgcgaggacgaggacaggctcgacggcgtcggctacgacggc
gtcggcgggatgcgcaagcagctggcgcagatcagggagctggtcgagctgccactcagg
cacccgcagctgttcaagtccatcggcgtcaagccgcccaagggcatccttctctacggg
ccgccgggctccggcaagaccttgatcgcccgcgccgtggccaacgagaccggggccttc
ttcttctgcatcaacggccccgagatcatgtccaagatggccggggagagcgagagcaac
ctcaggaaggcgttcgaggaggccgagaagaacgcgccctccatcatcttcatcgacgag
atcgactccattgcgcccaacagggacaagacccacggcgaggtcgagaggcgcatcgtc
tcccagctgctgacgctcatggacgggctcaaggcgcgcgcgcacgtcatcgtcatgggc
gccaccaaccgccccaacagcatcgaccccgctctgcgccggttcgggaggttcgaccgc
gagatcgacatcggcgtgccggacgaggtcggccgcctcgaggtgctgcgcgtccacacc
aagaacatgaagctcgccgacgacgtcgacctggacgtcgtcgccaaagacacgcacggc
tacgtcggcgctgacctggccgccctgtgcaccgaggctgccctacagtgcatcagggag
aagatggacgtgatcgacctcgaggacgagacgattgacgctgaggttgtcagctccatg
gccatcaccaacgaccacctcaatactgccctcgccggcaccaacccgtcggctctacgc
gagacattggtcgaggtgcccaatgtcagctgggcggacattggcggcctcgagggcgtc
aagcgggagctgcaagaaaccgtgcagtaccccgtggagcacccggaaaagttcgagaag
ttcggcatgtccccttccaagggcgtgctcttctacgggccccccggctgcggcaagacg
ctgctcgccaaggcgatcgcgaacgagtgccaggccaacttcatcagcgtcaagggcccc
gagctgctgaccaagtggttcggcgagagcgaggccaatgtccgcgagatcttcgacaag
gcgcgccagtccgcgccgtgcgtcctcttcttcgacgagctcgactcgatcgcgatgcgg
aggggcggcagcgcgggggacgccggcggcgccgcggacagggtcctcaaccagctgctc
accgagatggacggcatgaccgccaagaagacggtgttcatcatcggcgccaccaaccgg
ccggacatcatcgactcggccctgcttcgccccggccgcctggaccagctcatctacatc
ccggtgccggacgaggcctcgcggcaccagatcttcaaggcgtgcctgaggaggtccccc
gtcgccagtgacgtcgacctcgccgcgctggccaggttcaccgcgggcttcagcggcgcc
gacatcaccgagatttgccagcgggcgtgcaagtacgccatccgcgaggacatcgagaag
gacatggagcgggagaggcaggctaaggagaggccggacgacatggcggtggactgcgcc
gaggagccggcgcagatcaaggctgtccacttcgaagagtcgatgaggttcgcgaggagg
agcgtcagtgacgcggacatccgcaagtaccaggcgttcgcgcagacattgcagcagtcg
aggggcttcggcagcgagttccgcttccccaagcagccccaggcggcggagcctgcagcg
acggccaacgccgacgacgaggatgatctctacaactga
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