Panicum virgatum (switchgrass): 120688085
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Entry
120688085 CDS
T07260
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120688085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120688085
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
120688085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
120688085
NCBI-ProteinID:
XP_039826171
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All DBs
Position
9N:complement(3943210..3951884)
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AA seq
803 aa
AA seq
DB search
MAAASAAVRMLPDGGADDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSEL
RTSRLSPHKYYELYMRAFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGNVLPRLYLLC
TVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPLRGLFLRSYLSQISRDKLPDIGSEYEGDA
ESINDAVEFVLQNFIEMNKLWVRMQHQGPVREKEKRGKERNELRDLVGKNLHVLSQIEGV
DLDMYKETVLPRILEQVVNCKDDLAQFYLMDCIIQVFPDEYHLQTLETLLSAFPQLQPSV
DIKTVLSQLMDRLSNYAASSPEVLPEFLQVEAFAKFSNAIGKVIEAQPDMPVVGAVTLYV
SLLTFTLRVHPDRLDYVDQVLGACVKKLSGKAKLEDSRATKQIIALLSAPLEKYSNIVTA
LELSNYPRVMDYLDNATTKVMAVVIIQSIMKNTTCISTSDKIEALFDLIKGLIKDMDGAQ
DDELDEEDFKEEQNSVARLIHMLHNDDHEEMLKILCTVQKHILLGGPKRLTFTVPSLVFS
ALKLVRRLQGQDGDVTGEDVPATPKKIFQILHQTIEALSCVPSPELALRLYLQCAEAAND
CDLEPVAYEFFTQAFILYEEEIADSKAQITAIHLIIGTLQRMNIFGVENRDTLTHKTTGY
SAKLLKKPDQCRAVYACSHLFWTDDQDGIMDGERVLLCLKRALRIANAAQQMANATRGSS
GSVTLFIEILNKYLYFFEKGIPQITNTVIQDLIELIRTEQQSDNAVADPSTEAFFSSTLR
YIEFQKQKGGNIGEKYEQIKTSS
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcatcggcggcggtgaggatgctccccgacggcggcgccgacgacgaggag
cggtggctcgccgagggcatcgccggcgtccagcagaacgccttctacatgcaccgcgcc
ctcgactccaacaacctcaaggacgcgctcaagtactcggcgcagatgctctccgagctg
cgcacctcgcgactctcaccgcacaagtactacgagctctacatgagggcgtttgatgag
atgcggaagctggagatgttcttcagggaggagacccggcggggtagctgctccgtcgtt
gatctgtacgagcttgttcaacatgctggcaacgtcttaccgagactctatctcctgtgc
acagtgggatctgtgtacatcaagtcgaaagaggctcctgctaaagatgttcttaaagac
ctcgttgaaatgtgtcggggcattcaacatcctcttcgtggtcttttcctgagaagctac
ctttctcagataagcagagacaaattgccagatattggttccgagtatgaaggggatgct
gaaagcattaatgatgcagttgaatttgttcttcagaatttcatagaaatgaacaaactc
tgggtccggatgcagcatcaggggcctgtcagggaaaaagaaaagcgggggaaggaaaga
aatgaactgcgtgatctggtaggcaaaaaccttcatgtacttagccagattgagggtgtt
gaccttgatatgtacaaagaaactgtgcttccgaggatattagaacaggtggtcaattgt
aaggatgaccttgcacagttctacctgatggactgcataatccaagtctttccagacgaa
tatcatttacagacattggaaacactattgagtgcatttccccagctacagccaagtgtt
gatatcaaaacagtactgtcgcaacttatggacagattgtctaactacgctgcctcaagt
cctgaagtattgccagagttcttgcaagttgaggcttttgcgaagttcagtaatgctatt
gggaaggtgatagaagcccaacctgacatgccggttgttggagcagtaactctatatgtg
tcgcttctgacatttactctccgtgtacatccggatcggcttgattatgttgaccaagtg
ctgggtgcatgcgtcaagaaactttcaggcaaggcaaaacttgaagatagcagggcaaca
aagcaaattattgcacttcttagtgctcccctggaaaaatatagcaacattgttactgca
ttggaactttcaaactatcctcgagttatggattatctcgataatgctacaaccaaagtg
atggctgtggtaataattcagagcataatgaagaacacaacttgcatatctacttctgac
aagatcgaggcactgttcgatttaattaaggggcttataaaagatatggatggggctcaa
gatgatgagcttgatgaagaggactttaaagaggaacagaattccgtagcacgccttatt
cacatgttgcacaatgatgatcatgaggagatgctgaagatcttatgtaccgttcagaag
catatacttctcggaggacccaagcggctaactttcactgtaccttcattagtattctcc
gctctcaagttggttaggcgattacaaggtcaagatggagatgtcactggggaggacgtg
cctgcaactccaaaaaaaatcttccagatcttgcatcagactattgaagcgctttcatgt
gttccttctcccgagttagctctgagactgtatttgcagtgcgcagaggctgccaatgac
tgtgatttggaaccagttgcttatgaattctttacacaagcattcattttatatgaagaa
gaaattgcggattcaaaggctcaaataacagcaattcacctaatcattggaacccttcag
cgaatgaatatattcggggtggaaaacagagacaccctcacccataagacaacagggtac
tcagcaaaacttctcaagaagcctgatcaatgccgagcagtctatgcgtgttcgcatctt
ttctggactgatgaccaagatggaataatggatggtgaaagggtcctcctttgtttaaag
cgtgccttgagaatcgcaaatgctgcgcaacagatggctaatgcaacaaggggaagcagt
ggatctgtgactctatttatcgaaattttgaacaagtacttgtacttctttgagaaagga
atcccacagatcacaaatactgtgattcaagatttgatcgaattgattaggactgagcag
caaagtgacaacgctgtagctgatccatctacggaggccttcttttctagcactttacgg
tacattgaatttcaaaagcagaaaggtggaaacataggtgaaaaatatgaacaaataaag
acaagctcatga
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