Panicum virgatum (switchgrass): 120688089
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Entry
120688089 CDS
T07260
Name
(RefSeq) vacuolar protein sorting-associated protein 52 A-like isoform X1
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120688089
Membrane trafficking [BR:
pvir04131
]
Protein recycling
Others
EARP complex
120688089
Endosome - Golgi transport
Tethering complex
GARP complex
120688089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
DUF7795
Sec3_CC
zf-TRAF_2
SBDS_N
7TM_GPCR_Sri
RepB_C
Motif
Other DBs
NCBI-GeneID:
120688089
NCBI-ProteinID:
XP_039826176
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All DBs
Position
9N:complement(22414897..22443834)
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AA seq
807 aa
AA seq
DB search
MIYKKSTAGCWLASQTESIQTSLLSRMPSDACTVQLFFSPARLQSKQEQPPGRSKPKNRT
DPAAPRSVQNARPLQSGASARIGSRPPLTPFPSPPDREKSRRGAAARAKARRTTSVVAAT
PMAWAQEQRIEERFGRFLCFDEDSESEDISLDELEEELEEHKDYDVLITILRNGEKQRGM
ATLVEGNLGHIEETLIQDYIEDNDKLALLHDQIHECDIILSQIGSLLSGFQAHIGSISWE
IRSLQVKSLDISAQLKNRKLVETKLAAFVEEIIAPPGLVDILVNGEVNDGYARSLEILSK
KLKFVQVNPLINASKALNDITQELERLRQKALSKVSSHIIEIFFAMRKPGTNIQILQQNL
LQKHRYLVVFLKEHGSETYGDLCASYVDTMNKVLSTYFRVYVEALERQKLDIGASIDFSG
HDTITDIIARGREHLRDHRFMFSLGERANILKEIDQPGLVPQVNSRKYPYEVIYRSIQKL
LMDTASSEYLFVEAFFGDESLLYQVFEGPFAVIDHHLDLTLTKCHDAVCLMLMICITRKH
QLVMSNRQLPCLENYFDKAVMYLWPRFKVVFDMYLRSSYQCDAKTFWIDGTHPHHIVRCY
VEFTASLVQLNAECGDGQLDMNLERLRSAIDGLLVRLAQNFTTPKLQHLFVLNNYDMAIS
VLKEAGDEAKNLQRYFEDKLESNMMAFVDDLLMEHFSDLLRFVRSRVSEDLLFYTEHSNI
DELEPVVKNFAMKWRSALEIMHNEVVTSCSNLLSGMAILKAAMAQLLNDYNRLSECVKKI
PGGSALNRHLVSITSISYEIRKYSRAL
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgatctataagaaaagcactgctggttgttggctggcaagccaaacggagtcaattcag
acttcactactgtctcgaatgccaagtgatgcatgtactgtacaactttttttttcccct
gcaagattgcaatccaaacaagagcagccgccaggccgctccaagcccaaaaatagaacc
gacccggcggctccgcgatcggttcaaaacgcgcgcccgctgcagagcggcgcgagcgcg
cgaatcggatcgcgccccccgctcactccatttccctcgcctcccgatcgcgagaagagc
cgaagaggggcagcagccagggccaaggcgagaagaactacaagcgtggtagcagcaacc
cctatggcttgggctcaggagcagcgaattgaagaacgttttggtcggtttttgtgcttc
gatgaggattcggaaagtgaggatatatcactggatgagttggaggaggaactcgaagag
cacaaggattatgatgtactaataactattttaaggaatggtgaaaaacaacgtggcatg
gcgacattggttgagggcaacctaggccatattgaagaaactctgattcaagattatatt
gaagacaacgacaaacttgctctgttgcatgatcagattcatgaatgtgacattattttg
tcacaaataggatcacttcttagtggcttccaggcccatataggttcaataagctgggaa
attagaagcctccaggtgaaatccttggatataagtgctcaactgaagaaccgcaagttg
gtggagacaaagcttgctgcatttgttgaagagataattgctcctcctggtttagtagat
attcttgttaatggagaggtaaatgatggttatgccagaagtctggagattttgagcaaa
aagttgaaatttgttcaagtcaacccactgattaatgcatcaaaagctttgaatgatatt
acgcaagaactggaaaggcttcgacaaaaagcactatccaaggtttccagccacattatc
gagattttctttgctatgagaaagcctggaactaatatacagatattgcaacaaaatttg
cttcagaaacataggtatctcgttgtgtttcttaaagagcatggttccgagacatatggt
gatttatgtgcatcgtatgttgatacaatgaacaaggtactgagtacatattttcgtgtg
tatgtagaagcactagagaggcagaagctagatattggtgcatccattgattttagtgga
catgatactatcactgatattatagcaaggggaagggagcatttgagagatcaccgtttc
atgttttcattgggtgaacgtgcaaatattttgaaggagatcgatcaacctggcttggtt
cctcaagtcaactctcgcaaatatccatatgaagttatttacaggagcattcagaagctt
ctgatggacaccgctagctctgagtatcttttcgttgaagcattctttggagacgagtca
ctactttatcaagtttttgaaggaccttttgctgttattgatcatcatttggatcttact
cttacaaagtgtcatgatgctgtgtgcctgatgctcatgatctgcataactaggaagcac
cagctggttatgtccaacagacagcttccttgtcttgagaactactttgataaggctgtc
atgtatctctggccacgattcaaggtagtgtttgacatgtaccttagaagctcatatcag
tgcgatgcgaaaacgttttggatagatggtacccatccacaccatattgtaaggtgctat
gtggagttcacagcatcccttgttcaacttaatgctgaatgtggagacggtcagcttgat
atgaacttggagcgcttgcggtcagctattgatggtctacttgttaggcttgcccaaaat
tttacaactcccaagctgcagcacctttttgttttgaataattatgacatggccatctct
gtcctcaaggaagctggcgatgaagccaaaaatctgcaaagatattttgaagacaaacta
gaaagtaacatgatggcttttgtggatgatttgctcatggaacatttcagcgatttactt
cgatttgtgaggagtcgtgtatctgaagacctgctattttacactgagcactcaaatatt
gatgaacttgagccagttgtgaagaacttcgccatgaagtggagaagtgctctagagatc
atgcacaatgaagttgtaacttcttgcagtaacctcttgtccgggatggcgattctaaaa
gcagcaatggctcagttgcttaatgactacaacagactctcagaatgtgtgaaaaaaatc
ccagggggttcagctttaaacagacatctggtttccatcacctcaatttcatatgagatc
aggaaatactcaagagcactctag
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