Panicum virgatum (switchgrass): 120688118
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Entry
120688118 CDS
T07260
Name
(RefSeq) eukaryotic translation initiation factor 3 subunit B-like
KO
K03253
translation initiation factor 3 subunit B
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120688118
03012 Translation factors [BR:
pvir03012
]
120688118
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120688118
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
eIF-3
120688118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF2A
ANAPC4_WD40
WD40_WDHD1_1st
RRM_1
Beta-prop_ELP1_1st
WD40_Prp19
BORG_CEP
Es2
Motif
Other DBs
NCBI-GeneID:
120688118
NCBI-ProteinID:
XP_039826225
LinkDB
All DBs
Position
9N:51368088..51372689
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AA seq
720 aa
AA seq
DB search
MALAISMEGIEARAREIGVDLSAVDLDSITLPAGEDFGILSDDDEILRNEDPPELEMGLS
NIIVVDNLPVVPPEKFEKLENVIRKIYSQIGVIKENGLWMPVNPDTKKTYGYCFIEYNTP
QEAELAREKTNGYKLDKSHIFAVNMLDDFEKYMKVPDTWTPAEIKPYTPGENLLKWLTDE
KARDQFVIRAGTLTEVYWNDARKLAPELVFQKQYWTDSFIQWSPLGTYLATVHRQGSQVW
GGENGFERLMRFAHPMVKLIDFSPGERYLVTYSSHEPSNPRDTHRVVLNIFDVRTGKVMR
DFKGNADEFTTGGNVGVSGVSWPIFRWGGGKDDKYFARLGKNVISVYETDMFSLLDKKSL
KVENVVDFSWSPTDPIISLFVPEMGGGNQPARVSLVQIPGKEELRQKNLFSVSDCKMYWQ
NNGEYLAVQVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRF
AIIHGDGPRPDVSFYTMRTANNTSRVSKLTTLKAKQANALYWSPAGRFIVLAGLKGFNGQ
LEFYNVDELETMATGEHFMATDIMWDPTGRYLATAVTSVHEMENGFQIWSFNGKHLYKVS
KDHFYQFIWRPRPPSLLTPEKEEEISKNLKKYSKKYELEDQDAFNQLSEQERKRRTQLQE
EWDSWVAKWKQMHEEERAYRRELRDGEASDEEEEYEAKEVEVEEVVDVTEEVLAFDLDQE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggcaatctccatggaaggaatcgaggcgcgtgcgcgggagatcggggtggac
ctctccgccgtcgatctggactccatcaccctcccggccggcgaggacttcggcatcctg
agtgatgatgatgagatacttcgaaatgaggaccctcctgaacttgaaatgggtttatcc
aacattatcgtagtggacaatctgccggtcgttcctccagaaaaatttgagaagcttgag
aatgttattcgcaagatatacagccaaattggagtgataaaagaaaatggtctatggatg
ccggtaaacccagatacaaagaagacatatggctactgtttcattgagtataatacccct
caggaagctgagcttgcaagggaaaaaaccaatgggtacaagctcgacaagtctcatatc
tttgcagttaacatgcttgatgactttgagaaatacatgaaggttcctgacacatggacg
cctgcagaaataaagccatacactcctggagaaaatcttctgaaatggctaactgatgaa
aaggcccgagatcagtttgtcatccgtgctggtacattgacagaagtttactggaatgat
gctagaaagctggcacctgaactcgtgtttcaaaagcagtactggacagacagtttcatt
cagtggtcccctcttggaacatacttggcaactgttcataggcaggggtcacaggtgtgg
ggcggtgaaaatggcttcgagcggttgatgcgttttgctcatccgatggtcaaattgatt
gacttttctcctggtgagagatatttggtcacatacagcagccacgagcccagcaatcct
agagacacacatagggttgtcctaaatatctttgatgtaaggactggaaaagttatgcga
gacttcaagggaaatgctgatgaatttaccactggcgggaatgttggtgtttctggtgtt
tcatggcccatattcaggtggggtggtggaaaggatgataagtattttgcaaggcttggg
aagaacgtaatatcggtctatgaaacagatatgttctcccttcttgataagaagtcattg
aaggtagaaaatgtagtggacttcagctggtctcccactgatccaatcatatccttgttt
gtgcctgaaatgggtggtggcaaccagccagcaagggtgagccttgtgcaaattccaggc
aaagaggaactgcggcagaaaaaccttttcagtgtcagcgactgcaagatgtattggcag
aataatggagaatatcttgctgtccaggttgatagatacacaaaaacaaagaagagcacc
tacactgggtttgagttgtttagaattaaggagagagacatcccaattgaggtccttgaa
ctcgagaacaagaatgacaagatcattgcatttgcctgggaacctaaaggccatcgcttc
gccatcattcatggtgatggccctaggcctgatgttagtttttacaccatgcgaacagca
aataacactagccgtgtgtcgaagctcaccactctcaaggccaagcaagcgaacgcactg
tattggtctcctgctggccgcttcattgttcttgctgggctgaagggattcaatggacag
ctggaattctacaatgttgatgagcttgaaacgatggcaacaggagagcattttatggca
acagacataatgtgggatcctactggaagatatcttgcaactgctgttacctcagtccat
gaaatggagaatggatttcaaatatggtccttcaatggcaagcacctttacaaggtgtca
aaggatcacttctatcagtttatttggcggccaagaccaccatcacttttgactcctgag
aaagaagaggaaatatcaaagaacctgaagaagtacagcaagaaatacgaactagaagac
caggatgcgttcaaccagctgagtgagcaggagcgcaagaggaggacacagctccaggaa
gaatgggactcgtgggttgccaagtggaagcagatgcatgaggaggagcgtgcatatagg
agggagctcagggatggggaggccagtgatgaggaggaagagtacgaggccaaggaggtt
gaggtggaagaagtggtggatgtcaccgaagaagttctcgcatttgacctggatcaggag
tga
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