KEGG   Panicum virgatum (switchgrass): 120688195
Entry
120688195         CDS       T07260                                 
Name
(RefSeq) autophagy-related protein 3-like
  KO
K08343  ubiquitin-like-conjugating enzyme ATG3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    120688195
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120688195
   04121 Ubiquitin system [BR:pvir04121]
    120688195
   03029 Mitochondrial biogenesis [BR:pvir03029]
    120688195
Membrane trafficking [BR:pvir04131]
 Autophagy
  Autophagosome formation proteins
   Atg8 conjugation proteins
    120688195
Ubiquitin system [BR:pvir04121]
 Ubiquitin-conjugating enzymes (E2)
  UBL-conjugating enzymes
   120688195
Mitochondrial biogenesis [BR:pvir03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    120688195
SSDB
Motif
Pfam: Autophagy_act_C DUF3097_N
Other DBs
NCBI-GeneID: 120688195
NCBI-ProteinID: XP_039826317
LinkDB
Position
9N:52806948..52812355
AA seq 314 aa
MQVKHKVYELYKGTVERVTGPRTVSAFLEKGVLSVPEFILTGDNLVAKCPTWSWEAGDPS
KRKSYLPADKQFLVTRNVPCLRRAIKVEEEYDAAGAELVLDDDEDGEGWLATHGVQASKP
DEEEDIPSMDTLDIGKYDGIKSIPTYFSGGKKEEEEEDIPDMDTYEDTGDNLVAAEPSYF
VAEEPEDDNILRTRTYDVSITYDKYYQTPRIWLTGYDESRMPLKPELVLEDISKDHAGKT
VTIEDHPHLLAGKHASVHPCKHAAVMKKIIDVLMSRGGEPEVDKYLFIFLKFIASVIPTI
EYDYTMDFDLGSTS
NT seq 945 nt   +upstreamnt  +downstreamnt
atgcaggtgaagcacaaggtgtacgagctctacaagggcacggtggagcgggtcacgggc
ccgcgcaccgtctcagccttcctcgagaagggcgtcctctccgtacccgagttcatcctc
accggcgacaacctcgtcgccaagtgccccacctggtcctgggaagcgggcgacccaagc
aagcggaagtcgtatctccccgccgataagcagttcctcgtcacccgcaacgtgccttgt
ttaagacgtgccatcaaggtcgaagaagagtatgatgcagctggagccgagttggttctc
gatgatgatgaggacggtgaaggctggctcgcaacacatggcgtgcaagcatcaaagcca
gatgaggaggaagacataccctcaatggatacattggacatagggaaatatgatggaatc
aagtctattcccacctactttagcggtggtaagaaggaagaagaggaggaagatatacct
gacatggacacttatgaagacacaggggataatttggttgctgctgagccgtcatacttt
gtcgctgaagagcccgaagatgacaatattcttcgtaccagaacatatgatgttagcata
acgtatgacaaatactaccaaactccacgtatctggctgactggatatgatgagtcgaga
atgccactaaagcctgaacttgtgcttgaagatatcagcaaagaccatgcagggaaaacg
gtgactattgaagaccatcctcacttgttagcaggaaagcatgcttcggttcacccatgc
aagcatgcagctgtgatgaaaaagataattgatgttcttatgtctcgaggaggtgaacct
gaagttgacaagtaccttttcatatttttgaaattcatagcatcagtcataccaactatt
gagtatgattacacaatggactttgacctgggcagtacaagctga

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