Panicum virgatum (switchgrass): 120688212
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Entry
120688212 CDS
T07260
Name
(RefSeq) ABC transporter B family member 25, mitochondrial-like
KO
K05662
ATP-binding cassette, subfamily B (MDR/TAP), member 7
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120688212
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120688212
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB6, 7 subgroups
120688212
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Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_15
AAA_22
Zeta_toxin
AAA_21
AAA_18
DUF87
MMR_HSR1
FtsK_SpoIIIE
RsgA_GTPase
AAA_23
Motif
Other DBs
NCBI-GeneID:
120688212
NCBI-ProteinID:
XP_039826339
LinkDB
All DBs
Position
9N:complement(65288955..65302655)
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AA seq
739 aa
AA seq
DB search
MRPSSRILAAGHLHRGFRLEPSQTAAAAAAAVFRRLNGASRPGVPKPLTNPLLGGFGPNC
GIPPGKGGLFGRLGSFLPDSAYPPHGARLPRDTRGHAFSTSANAVTVGKPDNDKVKKDAS
KKDVDEQIADSQILKNLGKYLLLNDSPDFRFRLVLSLGLLVGAKVINVQVPFLFKLAIDW
LAALGGAEASLASFTETNATLLALFASPAAVLVGYGIARSGVSACTELRNAVFSKVTLRA
IRSVSRMVFSHLHELDLRYHLSRQTGALNRIIDRGSRAINYILTVMVFNVVPTILEIGMV
SSILAYKFGSTFAWITSVSVATYIAFTLAVTQWRTKFRTAMNKADNASSTVAVDSLLNYE
TVKYFNNEQFEVEKYDKYLRKYEDAALKTQSSLAYLNFGQNVIFSSALSTAMVLSSYGVM
SGALTVGDLVMVNGLLFQLSLPLNFLGSVYRESRQSLIDMKSMFQLLDEKPGIKDEPHAQ
PLQFKGGCIEFENVHFGYVPERKILDGATFTVPAGQSVAIVGTSGSGKSTILRLLFRFFE
STSGSIRIDGQDIRGVTLESLRKCLGVMPQDTVLFNDTIKHNIQYGRLSAKDEEVYDAAR
RAAIHDTIMNFPDKYDTVVGERGLKLSGGEKQRVSIARVFLKEPSILLCDEATSALDSTT
EASILNSLKSLSVDRTSIFIAHRLTTAMQCDQIIVLENGKVIEQGPHDVLLSKGGRYAEL
WFQQNNSDAIDPAAVNLEV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgcggccttcctcgcgcatactcgcggcgggccacctccaccgcggcttccggcttgaa
ccatcccagaccgccgccgccgccgccgccgccgtattccggcggctgaacggagccagc
aggccgggcgtgccgaaacctctcaccaaccctctcctcggaggcttcggacccaactgt
ggcatcccgcccgggaaagggggcctttttggccgcctcggcagcttcctgcccgactct
gcctacccgccgcacggcgcgcggcttccccgggacacgagaggacatgcattctccaca
tctgcaaatgctgtgacagttggaaagccggataatgacaaggtgaagaaagatgcttca
aaaaaggatgttgatgagcagatagcagattctcagatactgaaaaaccttgggaagtac
ttattattgaatgacagccctgacttccgcttcaggcttgtgttgtcgctgggcctatta
gttggtgcaaaggttattaatgttcaagtgcctttcttgtttaagcttgctatcgattgg
cttgcagcccttggtggtgctgaagcctcacttgcatcgttcacggaaactaatgccacc
ctattggctctctttgcaagcccagcagctgtgctggttggttatggaattgcacgatca
ggagtgtcggcgtgtacagagcttcgaaatgctgtattttctaaagtgaccttgagagcc
atccgttcagtatccagaatggtattttctcacttgcatgagcttgatcttcgttatcat
ctaagccgacaaactggtgctctaaatcgcataattgatcgaggcagccgtgcaataaat
tacattctgacagtgatggtattcaatgttgtgcctacaatactagagattggtatggtc
tcaagcatacttgcgtacaagtttggttccacttttgcttggattacttctgtttcagtt
gctacttatattgctttcactttggctgtcacacagtggcggactaaattcaggacagcc
atgaataaagctgataatgcttccagtacagtggcagttgactctcttctgaattatgag
actgtgaagtacttcaacaatgaacaatttgaagttgagaagtacgacaaatatttaaga
aaatatgaggatgctgcattgaagacccaaagtagccttgcctacctgaattttggtcaa
aatgttatctttagctcggctttatcaacagcaatggttttgagctcatatggagtaatg
agtggtgctcttactgttggtgatttggtcatggttaatggacttttattccagctctca
ttgcctctaaatttccttgggagtgtgtatcgagaatctagacaaagcctgattgacatg
aagtctatgtttcagttgcttgatgaaaaacctggaataaaggatgagcctcatgcacaa
cctttgcagttcaagggaggatgcattgaattcgaaaatgttcattttgggtatgtacca
gaaaggaagattcttgatggtgctactttcactgtacctgcaggacagagcgtggccatt
gtaggaactagtggcagcgggaaatcaaccattcttagacttctgttcagatttttcgaa
tcaacatcaggatctatacggattgatgggcaagatatccgaggagtaacactagagagc
cttagaaaatgtcttggtgttatgcctcaggacactgtactttttaatgacacgattaag
cataatatacagtatgggcggttatcagcaaaagacgaggaggtctatgatgctgcccga
cgtgctgctattcatgatacaattatgaacttcccagacaagtatgacacagtagtagga
gaacgaggattgaagctaagtggtggggagaaacaacgagtgtcaatagctcgtgtattc
ttgaaggagccctcaattctattatgtgatgaagcaacaagtgctcttgatagtactact
gaagcctccattttgaattctctgaaatctttatccgttgatcgaacatcaatctttatt
gctcatcgactcacgactgcaatgcagtgtgatcagataattgttttggagaatgggaag
gtaatagaacaaggacctcatgatgttcttctgtcaaagggtgggcgatacgcagaattg
tggtttcagcagaacaacagtgatgccattgaccctgctgcagttaacctagaggtttga
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