Panicum virgatum (switchgrass): 120688236
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Entry
120688236 CDS
T07260
Name
(RefSeq) E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120688236
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120688236
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
U-box type E3
120688236
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
120688236
NCBI-ProteinID:
XP_039826393
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All DBs
Position
9N:complement(27811691..27820734)
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AA seq
902 aa
AA seq
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MAVYYKFKSARDYDSIPIEGQFISVANLKERIFESKHLGRGTDFDLMISNAQTDEEYADE
ATMIPKNTSVLIRRIPGRPRKPIVTEPEESKVAEDVVEVTPIASGFLGDSSMKYPEESEW
DDEFGNELYVSDSLLSQPASQAVDASENKVDEDSKIKALIDTSALDYSQIPDSYGSGRGY
GRGMGGRMMAGRGFGRGLERKTPPPGYVCHRCKVPGHFIQHCPTNGDARYDVRRMKPPTG
IPKSMLMQTLDGSYALPSGAGAVLKPNEAAFEKEIEGLPTTRSVGDLPPELRCPLCKEVM
KDAVLTSKCCFRSFCDKCIRDYIINKSVCVCGATSILADDLLPNKTLRETISRILEAPPT
SSTENVGSMVQVQDMESALPVQPKVRSPAVSAASKEETKAPTPVEESPDVESLNGAKATN
NDVSSSDKKATTIPDVAEGSMESKNVKEDKPLEVTPVAKESQEKLPAGEQAVKKKKKKKA
RAPGNADEQWKNFQDFGAENFAGMPLGPAGVFNPYWGGGVPLPMDYMGAPFPGPMPYMGY
PPAPFDPFGGGVLPQDPFMPPGYMMPGVPRDLSELAVNPMGINMGPPIVGREEFDPRKLD
HRRREMDRFNEREREPHGRSREPRGRSVEREREREREHREREHSRERERERERNRELERE
RARDREPRREARESSGAINDSTSMRRKDRSRSHSQPDRSERALPPPSSPDHRHSRRSPHR
SSSSGKKRSSSDRYDDLPLPPPPPPPSSRHEPEPAKVQAAAAASKSKASVFSRISFPGGG
GGGGDGAKPSDAKRSRRASSDKPPAHSSSSSKKGAAAAEDNDGRHHRGGHRHNQNHREPA
AAAEEKRRPAAAATEYYGGGEDESEEEEQHFKRRPSSSSRREQEAQEEQPRHSRRSRDHK
RR
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgtattataaattcaagagtgccagagactatgactcgattccgatcgagggg
caattcatctcggttgccaacttgaaggagcggatttttgagtccaagcatcttggcagg
ggtacagatttcgacctcatgatctcaaatgctcagactgatgaagagtatgctgatgag
gctactatgataccaaagaacacatcagtattgattcggcggataccaggacggccaagg
aagcctattgtcacagaacctgaagagtctaaagtcgcagaagatgtagttgaagttacg
cccattgctagtggttttcttggtgattcatcaatgaaatatcctgaagaatccgagtgg
gatgatgagtttggcaatgaattatatgtttctgattcgctcctttctcagcctgctagc
caggcggttgatgcttctgaaaataaagttgatgaagacagtaaaataaaagcacttatt
gatacatccgcccttgactatagccaaatccctgatagttatggttctggaagaggttat
ggtagggggatgggtggcagaatgatggctggccgtggctttggacgtgggctggaacgt
aagacacctcctccaggttatgtttgtcatagatgtaaagtgcctggccatttcattcaa
cattgcccaacaaatggtgatgctagatatgatgtgagaaggatgaaacccccaactggg
attccaaaatcaatgttgatgcaaactctggatggttcatatgcactgccaagtggggct
ggtgctgttttgaagcccaatgaagctgcttttgagaaggagatagagggcctacccacc
acccgctctgtcggcgatcttccaccagagctacgctgcccattgtgcaaagaagtaatg
aaggatgctgttctaactagtaaatgctgctttaggagtttctgtgataaatgcatcagg
gactacataattaacaagtcagtgtgtgtctgtggtgccacaagcatattagctgatgat
cttctccccaataaaactctaagagaaaccatcagccgcatattagaggcaccaccaact
agcagcactgaaaatgtgggaagcatggtccaagtacaggacatggagtcagctctacct
gtacaacctaaggttagatctcctgctgtttctgctgcttcaaaggaggagaccaaagca
cccacacctgtagaagagtctcctgatgttgagagcctcaatggagcaaaagctacaaat
aatgatgtgagctcttcagataagaaggctaccacaattccggatgtcgctgaaggttcc
atggagtctaagaatgtgaaagaagataagccactagaagtgactcctgtagccaaagaa
tctcaagaaaagttgcctgccggggaacaagcagtaaagaagaagaaaaagaagaaggca
cgtgctccaggaaatgctgatgagcagtggaaaaattttcaagattttggagctgaaaat
tttgcgggaatgcctttgggtccagctggagttttcaacccttactggggcggaggagtg
ccgttgccaatggattacatgggtgcaccatttccaggtcccatgccttacatgggttac
ccaccagctccatttgacccttttggtgggggtgttctcccacaagatccatttatgccc
ccaggatacatgatgccaggagttcctagggatctttcagaattagcagttaaccctatg
ggaataaatatgggcccaccaattgtgggaagggaagaatttgatcccaggaaacttgat
cataggagacgcgaaatggaccgattcaatgaaagggagagggagccacatggtcgttct
cgggagccgcgtggccgttcagtggagagggagagggagagggagagggagcacagggag
agggagcactcccgggagagggagagggagagggagcgcaaccgcgagctggagcgggaa
cgagccagggacagggaacctcgaagggaagccagagaatcctcaggggccattaacgat
agtacctcgatgaggcggaaggataggtcaaggtcccactcgcagcccgacaggtcggag
cgcgcgctgccgccgccgtccagccccgaccaccggcactcgcggcgctccccgcaccgc
tcctccagctcgggcaagaagcgctcctcctccgaccgctacgacgacctcccgctgccg
cctccccctccgccgccctcgtcgcggcacgagccggagcccgccaaggtgcaggcggcg
gcggcggcgtccaagtccaaggccagcgtcttctcccgcatcagcttccccggcggcggc
ggcggcggcggcgacggcgcgaagccctccgacgccaagcgcagccgcagggcgtcctcc
gacaagccccccgcgcactcctcttcctcctccaagaagggcgccgcggcggccgaggac
aacgacggacgccaccaccgcggcggccaccggcacaaccagaaccaccgcgagcccgcg
gcggctgctgaggagaagcggaggcccgccgccgccgcgaccgagtactacggcggcggc
gaggacgagagcgaggaagaggagcagcacttcaagcggcgcccgtcctcgtcctcccgg
cgcgagcaggaggcgcaggaggagcagccgcggcactcgcggcggtccagggaccacaag
cgccggtga
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