Panicum virgatum (switchgrass): 120688239
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Entry
120688239 CDS
T07260
Name
(RefSeq) chlorophyll a-b binding protein 5, chloroplastic
KO
K08913
light-harvesting complex II chlorophyll a/b binding protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00196
Photosynthesis - antenna proteins
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09102 Energy metabolism
00196 Photosynthesis - antenna proteins
120688239
09180 Brite Hierarchies
09181 Protein families: metabolism
00194 Photosynthesis proteins [BR:
pvir00194
]
120688239
Photosynthesis proteins [BR:
pvir00194
]
Antenna proteins
Light-harvesting chlorophyll-protein complex (LHC) - Plant, Green alga [OT]
LHCII
120688239
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Gene cluster
GFIT
Motif
Pfam:
Chloroa_b-bind
Motif
Other DBs
NCBI-GeneID:
120688239
NCBI-ProteinID:
XP_039826403
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Position
9N:complement(18259284..18260347)
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AA seq
261 aa
AA seq
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MAASALHQTNSFLGQALVSRPAGGADAGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQ
TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVK
FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEG
LDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFD
HVADPVANNAWAYATNFVPGK
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgtcggcgctgcaccagaccaacagcttcctcgggcaggccctggtctcccgc
cccgccggcggcgccgacgccggcgggcgcatcaccatgcgccgcaccgtgaagagcgcg
ccccagagcatctggtacggccccgaccgccccaagtacctcggcccgttctccgagcag
acgccgtcgtacctgaccggcgagttccccggcgactacgggtgggacacggcggggctg
tccgccgacccggagacgttcgcgcgcaaccgcgagctggaggtgatccactcgcggtgg
gcgatgctgggcgcgctggggtgcgtgttcccggagatcctggccaagaacggcgtcaag
ttcggcgaggccgtgtggttcaaggccggcgcgcagatcttctccgagggcgggctggac
tacctggggaacccgaacctggtgcacgcgcagagcatcctggccatctgggcgtgccag
gtggtgctcatgggcttcgtcgagggctaccgcgtcggcggcgggccgctcggcgagggg
ctcgacaaggtgtaccccggcggcgccttcgacccgctgggcctcgccgacgacccggac
accgccgcggagctcaaggtcaaggagctcaagaacggccgcctcgccatgttctccatg
ttcggcttcttcgtgcaggccatcgtcaccggcaagggccccatcgagaacctcttcgac
cacgtcgccgaccccgtcgccaacaacgcctgggcctacgccaccaacttcgtccccggc
aaatga
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