Panicum virgatum (switchgrass): 120688266
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Entry
120688266 CDS
T07260
Name
(RefSeq) BRCT domain-containing protein At4g02110-like isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120688266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120688266
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120688266
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
120688266
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120688266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
PHD
Motif
Other DBs
NCBI-GeneID:
120688266
NCBI-ProteinID:
XP_039826441
LinkDB
All DBs
Position
9N:67546848..67553803
Genome browser
AA seq
1508 aa
AA seq
DB search
MASPGTDDDIGDNHLFDGVRFFLVGFEGDVASQYRLEMERHGGVDAGPSGNGCTHVVVSN
LFYDDPTCVAARAEGKKVVSEQWVEDSLDHGVLADADRVIYWPARHSKGIPGAQSLLICL
TGYQRNYREYIMKMVSLMGARFSKPLLANAVTHLICYKFEGEKYEVAKKVNIKLVNHWWL
EDCLKAWEILPVDDYSKSTWDLELMDAHANDSEHEAEAAGPRPLNSRSNVRCTPNSKSCE
EAIVKPDVYASKLSPITPSGNRLVVAGRNLNTLGHIIKTEYAENKTHGVAGQSSATANST
IAVSAKVNVFAPIQSPPGHIMKTEMESSKTHDIIGQGSPNSSLLAVSAMDDVLAPIQTSL
GLSQKRDNSVVRNINSLNVQKAEEKYVGVNTQDLASGIVVPTSSSKVTLFSNHHLNTLNG
TPGILIGHTDNVSGKSSASHDQIDVSKVLLTSPSRGNQSVNVVDSSKVNRWQHQEKDGPS
GIDVTGAGWLTTDDKVTNHESNPKSGGDSKSNSIKNTRNSKKASQKSSLLEGHSVNHMAS
PKKAEESTPRADSNISSLQMGHQKAFEHADVQSMKGNENIKTVDGLDDGAYAQKRKSLVS
PSSLNLQKEDLVSETGPLDSPFVSWLSDASDAEANAVSFRKQQSSLSTSRETRSRKTSLK
HGGPINGIKLPESSSSDKNVKSLPKARMSLKAMEESKRTTSPSPTVPDGRTRSSFSFQNK
DREDAQGSGNAVNQDFLHEIGSVRTKDQARDKSVRSSSNSRVVSSSGNAGTKITDSLKVN
DNEVAVASNSELEKVVSDANVKEGKNRFQDTSSNALGETSNSKKVATHVGRNAGAKRPRG
ASIEDEGSAKKVVPESWPAIRHGHADPASRSVCSSAGAAELKTNAPKKTLICGVTDIVAK
RTRNACAKIDNARLTSRLEFSKVNSQENVEINHKKFFGTENADEHQRSSPKKIPNTRVRN
KAAKRSRKSDTNTSNETLVDKSETVAAGSLFDDLFPSDNVEECPKNLSSCASASDCGTLT
PKTISNVRIRNAVPKRKIKTVEDKSGRKCGKVGSAIASVAKAVSSKTVEEISCNINKVTA
DPDSEKSNRDMTRDVSGLFCQDSGTVDKREGPHNSKLRSSKRNKVLTSYHEKENRLDCSN
LNSKSNRTRSLCSKSDAKSIEKQTVVLSEHQRVKGNESGALILSEPSLFILSGDREQRRE
YHSILRRLKGRVCRDSHHWTYEATHFIAPDPLRRTEKFFAAAAAGRWILKREYLTSCVEA
GKLLDEEPFEWFGTGLNDGETISFDAPRKWRNIRQQMGHGAFYGMQIVVYGQLILPTLDT
LKRAVKAGDGTILATSPPYTRFLDSGLDFAVVSASIPRADAWVQEFIRHGIPCVSGDYLV
EYVCKPGHPLDRHVLFKTNNLANKSLEKLKKNQDEMATEETEQSEDEDDPEDLSCSACGL
KDRGEVMLICGDEDGETGCGIGMHIDCCDPPLDAVPDDDWLCPKCAVPKAKTKPTRGAER
KARGSRRG
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgcccggcacggacgacgacatcggcgataaccacctgttcgacggcgtccgc
ttctttctcgtcggattcgagggcgacgtcgcgtcccagtaccgtttggagatggagcgg
cacggaggcgtcgacgccgggccgtcgggcaacgggtgcacgcacgttgtcgtgtcgaac
ctcttctacgatgacccgacgtgcgtggccgcgcgagcagaggggaagaaggtcgtcagc
gagcaatgggtggaggacagcttggatcacggggtgcttgctgatgctgatagggttatc
tattggccggcgagacattcaaagggaataccgggtgcgcaatcactgcttatctgtttg
acgggttaccaaagaaactatcgcgaatacataatgaaaatggtttctttaatgggagca
cgattctccaaacctttgttagcaaatgccgtcactcaccttatttgctataaatttgaa
ggtgaaaagtatgaggttgcgaaaaaggtgaacatcaaacttgttaatcactggtggttg
gaagactgcttaaaggcatgggaaattctcccagtcgatgattatagtaaaagcacttgg
gatctagagttaatggacgcgcatgccaatgactctgaacatgaagcagaagctgcaggt
ccaaggccgttgaacagtaggtccaatgtcaggtgcacccccaactcaaaaagttgcgag
gaagctattgtgaagcctgatgtctatgcatcaaagctatcacctatcactcccagtggc
aatagactggtggttgcgggaagaaatttgaacacccttggtcatatcataaagacagaa
tatgcagaaaacaagacacatggcgttgcaggtcaaagcagtgctactgctaactctacg
attgcagtttctgctaaggttaatgtctttgcacccattcaaagcccaccaggtcatatc
atgaagacagaaatggaaagcagcaagacacatgatattataggccaaggcagtcctaac
tctagtttattggcagtttctgcaatggatgatgtcctcgcacccattcaaacttcactt
ggcctcagtcaaaagagagataactctgtagtaagaaacataaatagcctgaatgtgcag
aaagctgaagaaaaatatgttggtgtaaacacacaggaccttgcaagtggtattgtagtc
cctacaagctcaagcaaagtgactctttttagtaatcatcatctaaataccttaaatggg
actccaggcattctaattggccatacggataatgtttctggaaaatcttctgccagtcat
gatcagattgatgttagtaaagtcctattgaccagcccttcaagaggaaaccagtctgtg
aatgttgtcgattcatcaaaagttaacagatggcaacatcaggagaaggacggaccctca
ggtattgatgtcacaggtgctggttggttaactactgatgacaaggtcaccaatcatgag
tccaatccaaaatcaggaggtgattccaaatccaacagcatcaagaacacaaggaactct
aaaaaggcctctcagaagtcatcgttactggaagggcattcagttaaccatatggcatca
cctaagaaggctgaagaaagcacaccaagagctgactccaatatttcttcattacaaatg
ggacatcaaaaggcttttgagcatgctgacgttcagagcatgaaaggcaatgaaaatatt
aagactgtggatggactagatgatggtgcatatgctcagaaaaggaaaagcttagtctcc
ccatctagcttaaatttgcaaaaggaagatctggtgtccgaaactggtcctttagattct
ccatttgttagttggctgagtgatgcttctgatgctgaagctaatgctgtaagtttcaga
aagcaacaatctagcttatctacaagcagagaaacaagatctaggaagacttctctcaag
cacggtggtcccattaatggaatcaagcttcctgaatcttcttcaagtgataagaatgta
aaatctttaccgaaagcaagaatgtcactcaaagcaatggaagaaagcaaacgcaccacg
agtccttcacccactgttccagatggaaggacaaggtccagtttctcctttcaaaataag
gaccgggaagatgcacaaggtagtggtaatgcagtgaatcaagatttcttgcatgagata
ggaagtgtccgcacaaaggatcaggcacgtgacaaatctgtacgcagttcaagtaattca
cgcgtcgtttcctcttctggaaatgctggcaccaagataactgattcactcaaagtcaat
gataatgaagtggcagtggcatcaaattctgaacttgagaaggtggtgtctgatgccaat
gtgaaagaaggcaaaaaccgatttcaagacacttcaagcaatgctctgggtgaaaccagt
aattcaaagaaagtagcaactcatgttggaaggaacgcaggtgccaagaggcctcggggt
gctagtattgaggatgaaggatcagctaagaaagtcgttcctgagtcttggcctgctatt
cgtcatggacatgctgatccagcctctagaagtgtctgcagctcggcaggtgcagctgaa
ctcaaaacaaatgctccaaagaaaacactgatttgtggagtgacagatattgttgcaaag
aggacacgaaatgcttgcgccaagatagacaacgcacggctaacttctagattggaattc
agtaaggtgaattctcaagaaaatgttgagataaaccacaaaaagttttttggcactgaa
aatgctgatgaacatcaaagaagttcgccgaagaaaataccgaacaccagagtaagaaat
aaagctgcgaagaggtcacggaaatctgacaccaacacaagcaatgaaacattggttgac
aaaagcgagacagtggcggctggttcgttgtttgatgacttgtttccctcagacaatgtt
gaagaatgccctaaaaatctttctagttgtgcaagtgctagtgactgtggaacacttacc
cccaagaccatttcgaatgtcagaattaggaatgcagttcccaagaggaaaataaaaact
gtagaagacaagtcaggtagaaaatgtggcaaagttggtagtgccattgcatctgtagca
aaagctgtctcatcaaagacagtcgaagagatttcatgcaatatcaacaaagtaactgct
gatccagactccgagaaatccaatagggatatgacaagagatgtttctggactgttttgc
caagattctggtactgtagacaagcgagaaggaccacacaattctaagttgagaagcagc
aaaagaaataaagttctgacttcatatcatgaaaaggagaacagactagattgtagtaat
ctcaactctaaatcaaatagaactcgcagtttgtgttccaaatctgatgcaaaatcaatt
gagaaacagacagtagtgctcagtgagcaccaaagggtaaaaggaaatgaatctggagcc
ttgatcttgagtgaaccttcattatttattttaagtggagatcgggagcagagaagggag
tatcactcaattcttagacgcctgaagggacgagtttgtagggattcacatcattggaca
tacgaagcaacacatttcattgccccagatcctcttaggagaactgagaagttctttgca
gcagctgcagcaggcaggtggatactcaagagagagtacttgacatcgtgcgttgaggca
ggcaagcttctggatgaggaaccatttgaatggtttggcacaggccttaatgatggagag
acaatcagctttgacgcacccagaaaatggcgaaatataaggcaacagatgggacatggt
gccttctatggaatgcagatcgttgtctatggacagcttatattaccaacgttggataca
ttgaagcgcgccgtaaaagctggtgatggcaccattttggcgacatcaccaccatacacc
cgatttctagactctggacttgacttcgctgtggtatcagcgagcataccaagagcagac
gcatgggttcaggagttcatccggcacggtattccctgtgtcagtggcgattatctggtt
gagtacgtctgcaagcctggccaccccctcgaccgacatgttctcttcaagacgaacaat
ctggccaacaagtcccttgagaaactcaagaagaaccaggacgagatggccaccgaggag
acggaacagtcggaagacgaagacgatccggaggacctgagttgctcagcgtgcgggctc
aaggaccggggagaagtgatgctgatctgtggtgacgaggatggcgaaaccggttgtggg
atcggtatgcacatcgactgctgcgaccctcccctggacgctgtccccgacgacgattgg
ttgtgccccaagtgcgctgtaccgaaagccaagacaaagcctactagaggcgctgagcgc
aaggcaaggggatccaggcgagggtga
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integrated database retrieval system
