Panicum virgatum (switchgrass): 120688269
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Entry
120688269 CDS
T07260
Name
(RefSeq) DNA repair protein XRCC4-like
KO
K10886
DNA-repair protein XRCC4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120688269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120688269
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120688269
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Gene cluster
GFIT
Motif
Pfam:
XRCC4
DUF4201
Jnk-SapK_ap_N
DUF3810
Motif
Other DBs
NCBI-GeneID:
120688269
NCBI-ProteinID:
XP_039826447
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Position
9N:complement(8453385..8456097)
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AA seq
278 aa
AA seq
DB search
MAATTHAAPPRHSCAKLSVAVEDPKAAGAGAVFVRATWLPTRFSLAVTDGAGAWVADASD
AEVRLRAEQWDQPVAEYLALAERYLAFHQPDSTYSFHDAGKGNRRLSWTFERQGTKLEWR
WKLQPSPNTQQTVYEILDFLMDANIRLSEEVVRKTQSFDKLKQEAEKCLQQSERFSTEKA
EFEQATFSKFVDVLNSKKAKLRQLRDKVAELESADKPPKDDEEENSTDRTELFEEGSDKE
ASVNDEPSDTGSVDLHSSPEKSAATSRGRGRGRKRAKK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaccacccacgcggcgccgccgaggcacagctgcgcgaagctctcggtggcg
gtggaggaccccaaggcggccggcgccggcgcggtgttcgtcagggccacgtggctcccc
acccgcttctccctcgccgtcacggacggcgccggcgcctgggtcgccgacgcctccgac
gccgaggtgcgcctccgcgccgagcagtgggaccagcccgtcgccgagtacctcgcgctc
gccgagcgatacctcgccttccaccagcccgactccacctactccttccacgacgccggc
aaaggcaatcgcaggctgtcatggacatttgaaagacaaggtaccaagttggaatggcgt
tggaagctccagccatcacctaacacgcagcagactgtatatgagatccttgatttcctt
atggatgcaaatattcgcttgagtgaagaggttgttaggaaaacacaatccttcgacaag
ttgaaacaagaagctgagaagtgcttgcaacaaagtgaaagatttagtactgagaaggct
gagttcgagcaagccaccttttcaaagtttgttgatgtcttgaattcgaagaaggccaag
ctcagacagctccgggacaaggttgctgaactcgaatcagctgacaagcctccaaaggat
gacgaggaggagaactcgacagaccgaacagagctattcgaggaaggaagtgacaaagag
gccagtgtcaatgatgaaccctccgacacaggcagcgtagatcttcatagctctcctgag
aaatctgcagccacctccagaggaaggggtcgaggccgcaagagagcaaaaaaatag
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