Panicum virgatum (switchgrass): 120688343
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Entry
120688343 CDS
T07260
Name
(RefSeq) two-component response regulator ORR21-like isoform X1
KO
K14491
GARP family transcription factor, ARR-B subfamily
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120688343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120688343
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-like factors
120688343
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Response_reg
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
120688343
NCBI-ProteinID:
XP_039826561
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Position
9N:complement(73610330..73615683)
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AA seq
685 aa
AA seq
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MAEARGGDFPVGMKVLVVDDDPTCLVVLKRMLLECRYDVTTCPQATRALTMLRENRRGFD
VIISDVHMPDMDGFRLLEHVGLEMDLPVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEE
LKNIWQHVVRKKFNENKDHEHSGSLDDTDRNRPTNNDNEYASSANDGGDGSWKSQKKKRE
KEEDEADLENGDPSSTSKKPRVVWSVELHQQFVNAVNHLGIDKAVPKKILELMNVPGLTR
ENVASHLQKFRLYLKRIAQHHAGIPHPFVAPASSTKVAPLGGLEFQALAASGQIPPQALA
ALQDELLGRPTSSLALPGRDQSSLQLAAIKGNKPHGEREIAFGQPIYKCPNNTYGAFPQS
SPGVGGLPSFGAWPNNKLGMTDSPSVLGNVNNSQNSNLLLHELQQQPDSLLSGTLHNIDV
KPSGIVMPSQSLNAFPASEGISPNQNPLVIPSQSQSFLASISPSMKHEPVLASSSPSNSL
LGGIDMVNQASTSQPLISTHGTNLPGLLNRSSNAVPSPGISNFQSGNNPYVVNQNAMGVS
SRPPGVLKTESTDSLSRSYGYIGGSTSVDSGLLSQSKNPQYGLLPNPNDVTGSWSPSQDI
DSCGNNLGQGYPGSTSSNYQSSNVTLGKLPDQGRGRNHEFVGKGTCIPTRFAVDEVESPT
NNLSHNIGNSADIVNPDMFGFSGQM
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcgcggggaggggacttccccgtggggatgaaggtgctggtggtggacgac
gacccgacgtgcctcgtcgtgctcaagaggatgctcctcgagtgccgatacgacgtaaca
acatgtcctcaggctacaagagcactaactatgttgcgagagaataggcgtggttttgat
gttataataagtgatgtccacatgccagatatggacggattcaggttacttgaacatgtt
ggccttgaaatggaccttccagttattatgatgtctgctgattcaagaacagatattgtg
atgaagggaataaagcatggagcatgtgactatttgataaaacccgtcagaatggaggaa
ttgaaaaacatctggcagcatgttgttaggaaaaaattcaatgaaaacaaggatcatgag
cattcaggtagcctagatgacactgatcgtaacagaccaaccaataatgataatgaatat
gcttcctctgcgaatgatggcggcgatggtagttggaaatctcagaaaaagaaaagagag
aaagaagaggatgaagctgatcttgaaaatggtgatccttcttctacatcaaagaaacca
agagttgtttggtcagttgagcttcatcaacaatttgtaaatgcagtcaatcaccttgga
atagacaaagctgttccgaagaaaattttggagttgatgaatgtccctggcttaactagg
gaaaatgttgccagccatttgcagaaattcagactctatctgaagagaatagctcagcat
catgcaggaatacctcatccatttgttgcgcctgcttctagtactaaagttgccccacta
gggggattggaattccaagctttggctgcttccggtcagatccctcctcaggctctggct
gctttgcaggatgaactcctaggtcgaccaacaagcagtttggcgttgcctggaagggac
cagtcatctttacaacttgctgcaatcaaaggaaacaagccccatggagagagagaaata
gcatttggtcaacccatatacaagtgtccgaataacacgtatggggcattccctcaaagc
agcccaggtgttggaggattgccatcttttggagcttggccgaataacaaacttggtatg
actgattcaccaagcgtgttgggaaatgtgaacaattctcaaaatagcaatttgctattg
catgaattgcaacaacagccagactccttgctgtcaggaacccttcacaatattgatgtc
aaaccttctggcatagttatgccctctcaatcattaaatgcattcccggctagtgagggt
atctcgcctaatcaaaatcccttggtgataccttcacaatcacaaagttttctggcatcc
atttctccatccatgaaacatgaacctgtccttgcatcgtcttcaccatcaaacagtctg
ttgggtggaattgatatggttaatcaagcttcaacaagtcagcctttgattagtacccat
ggaacaaaccttcctggtctcctgaaccgcagctcaaatgcagtgccttcaccaggcatt
agtaattttcaaagtgggaataatccttatgtggttaatcagaatgctatgggagttagc
tcaagaccaccaggtgttctgaagactgagagcactgactcactgagtcgaagttatggc
tatatcggtggcagcaccagcgtggactctggcttgctgtctcagtccaaaaatccacag
tacggtttattgccaaacccaaatgatgttacaggcagctggtctccttcacaagatatt
gatagttgtggaaataatcttgggcaaggctaccctggctccacttcatctaactaccag
agttccaatgtgacccttgggaagttgcctgatcaaggacgagggaggaatcatgagttt
gttgggaaaggtacttgcattccaacccgctttgcagtggatgaggttgagtctccaact
aacaacttgagccacaacattggaaacagtgcagacatagtgaacccggacatgttcgga
tttagtggacagatgtga
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