Panicum virgatum (switchgrass): 120688352
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Entry
120688352 CDS
T07260
Name
(RefSeq) WD repeat-containing protein 70-like
KO
K24752
WD repeat-containing protein 70
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120688352
03036 Chromosome and associated proteins [BR:
pvir03036
]
120688352
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120688352
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120688352
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
120688352
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
Other DSBR factors
Others
120688352
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_Aladin
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML
WD40_Gbeta
Beta-prop_WDR75_1st
DSE1_N
Beta-prop_SPT8
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
PAC11
Beta-prop_WDR36-Utp21_1st
WD40_RFWD3
Beta-prop_WDR19_1st
CFAP251_N
eIF2A
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_DCAF4
ASA1
Pep3_Vps18
Beta-prop_NOL10_N
PEP5_VPS11_N
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
120688352
NCBI-ProteinID:
XP_039826575
LinkDB
All DBs
Position
9N:24994047..24998686
Genome browser
AA seq
624 aa
AA seq
DB search
MADGGDMDEEAMRAFFPLSFGKTAARPTSAASSSAHSSTLRKPQNPSNPKPSSSTAADDD
GGAMIGPPRPPPTPAGDDDDEEEGGGMIGPPRPPPLSAHGEGEDDEGGCMIGPPRPPTAE
EDEEEEENDDDDDMEDDGDGGFNRIPLSNEIVLRGHTKVVSALAVDHTGSRVLSGSYDYT
VRMYDFQGMNSKLQSFRQLEPFEGHQVRSLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE
FVKGDMYIRDLKNTKGHISGLTGGEWNPKSKETILTSSEDGSIRLWDVSDFKSQKQVIKP
KLVRPMRIPVTSCAWDHEGKRIVGGIGDGSIQLWTIKTGWGSRPDIHVEKTHTEDITGVK
FSTDGQILLSRSMDSTLKIWDLRKMKTPLKVFEDLPNHYAETNAAFSPDEQLIVTGTSIE
KDGDNGGLLCFFDRKKLELVSKVGISPHYSVIRCLWHPRINQVFATVGDKKEGGSHILYD
PSISQRGALVCVGRAPRKKSVDDFEVQPVIHNPHALPLFRDQPSRKRQREKILKDPLKSH
KPEAPVNGPGYGGRVGTSKGSLLTLYLLKEGGLIKETWMDEDPREAILKYADAAEKDPKF
IAPAYSQTQPKPVFAESDSDNEEK
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcggcgatatggacgaggaggcgatgcgggccttcttcccgctctccttt
ggcaagaccgccgcgcgccccacctccgcggcctcctcctccgcccattcctccaccctc
cgcaagccccaaaaccctagtaaccccaagccctcctcctccaccgcagctgacgacgac
ggaggcgccatgattggtccccctcggccgccgccgacgcccgcgggggacgacgacgat
gaagaggagggcggcggcatgatcgggccgcctcggcccccaccgctctccgctcacggc
gagggggaggatgacgagggcggctgcatgattggaccgcctaggccgccgacagcggag
gaggacgaagaggaggaggagaacgacgacgacgacgatatggaggacgacggtgatggc
gggttcaataggatccctctcagcaacgaaattgttctgcgggggcacaccaaggttgtc
tcagcccttgccgttgaccatacaggatccagagtgctctctggtagctatgattataca
gtgcgcatgtacgatttccagggtatgaattcaaaactgcaatcattcagacaattggaa
ccctttgagggccatcaagttcgtagcctaagttggagcccaacgtccgaccgattctta
tgtgttaccggttctgctcaggccaaaatttatgaccgtgatggcctcacgcttggcgag
ttcgttaagggtgatatgtatattcgtgatctaaagaatacaaagggacacatttctggg
ctgacaggtggggagtggaatccaaagtcaaaagagactattctgacctcatctgaagat
ggttcaatacgtctctgggatgtgtcagactttaaaagtcaaaagcaggtcatcaaacca
aagctagtaagaccaatgcggatccctgttacatcatgtgcatgggaccatgaaggaaaa
cgaatcgtgggtggcataggagatggttcgatacagctctggactataaaaactggatgg
ggtagcagaccagatatccatgttgagaaaacacatacagaggatattactggagttaag
ttttcaacagatggacagattcttctgtcaagaagtatggatagtactctgaagatatgg
gatctgagaaaaatgaaaactcctttgaaagtgtttgaagatttgccaaatcactatgct
gagacaaatgcagcttttagcccagatgagcaacttattgttacaggaacctctattgaa
aaggatggtgacaatgggggactactctgtttctttgatagaaagaaacttgagcttgta
tcaaaggtggggatttcaccacattacagtgtgatacggtgcctatggcatccaaggatc
aaccaggtgtttgctacagttggggacaagaaagaaggcgggagtcatatcctttatgat
ccttctattagtcagagaggagctcttgtatgtgttggacgagcaccaaggaaaaagtct
gtcgatgactttgaggtgcaacctgtcatacacaatccacatgcattgccacttttcaga
gatcaaccaagtcgtaaacgtcaaagagagaagatactaaaggacccgctcaaatcacac
aaaccagaagcacctgttaatggtccgggttatggtggaagagttggtacttcaaaaggc
agcttactgacactgtacctcttgaaggaaggtggtttaattaaggagacctggatggat
gaagatccaagagaagcaattttgaagtatgctgatgctgcagagaaagatccaaagttt
attgcgccagcttattctcaaacccagccaaaacctgtctttgcagagtctgattcagac
aatgaagagaaataa
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