Panicum virgatum (switchgrass): 120688379
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Entry
120688379 CDS
T07260
Name
(RefSeq) SNW/SKI-interacting protein A-like
KO
K06063
SNW domain-containing protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120688379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120688379
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19-related factors
120688379
Complex C
120688379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SKIP_SNW
Motif
Other DBs
NCBI-GeneID:
120688379
NCBI-ProteinID:
XP_039826616
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All DBs
Position
9N:63640195..63642843
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AA seq
605 aa
AA seq
DB search
MATLKDLLPAPKTSASTFYDHSSDPWFQERYGGESAQASAAARPAGAARTIPPYGKRAGF
VPRRPEDFGDGGAFPEIHVAQYPLGMGRRDDKGGSKILALTVDAHGSVAFDAVVKQGENA
GKIVYSKHSDLVPKIATSDSQAPDDDEEQKQIEETTERTKAALEKVVNVRLSAAQPKNVP
THDSESKFIKYKPSQQSAAFNSGAKERIIRMSEMAVDPLEPPKFKHKRVPRASGSPPVPV
MHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSE
ALYVAEQKAREAVQMRSKVQRELMLKEKERKEQELRALAQKARMERTGVPSAPSAVPAGG
GRGAVDAIDEDMDMEQPREPREQHRESREEREARIERDRIREERRRERERERRLEAKDAA
MGKKSKITRDRDRDISEKIALGMASTGGAKGGEVMYDQRLFNQDKGMDSGFATDDQYNIY
SKGLFTAQSTMSTLYRPKKDGDSDVYGDADEQLEKVMKTERFKPDKAFTGASERTGKRDR
PVEFDKQEENDPFGLDQFLTEVKKGKKAVEKIGGGGTMKASGGSSMRDDYDGGSGRSCIN
FERGR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctaaaggatctcctcccggcgcccaagacgtcggcgtccaccttctacgac
cacagcagcgacccctggttccaggagcggtacggcggggagtcggcgcaggcgtcggcc
gcggcgaggcccgcgggcgccgccaggaccatccctccgtacgggaagcgggcggggttc
gtgccgcgccgaccggaggactttggggatggcggcgccttcccggagatccatgtcgcg
cagtatccgctcggcatgggccgccgcgacgacaagggcgggtccaagatcctcgcgcta
accgtcgacgcgcatgggagcgtcgccttcgacgccgtcgtcaagcagggcgagaacgcc
ggcaagatcgtctactccaagcacagcgacctcgtgccgaagatcgccacgtccgattcg
caggcgccggacgacgacgaggagcagaagcagatcgaggagaccacagagcggaccaag
gctgccttggagaaggttgtcaacgtccgcctctcagctgctcagcccaagaatgtgccg
acacatgattctgagtccaagtttattaagtataagccgtcacagcaatcagcggccttc
aattcaggtgccaaggagaggatcattcggatgtcggagatggcggtggatcctcttgag
ccgccaaagttcaagcacaagcgtgtgccccgggcgtctgggtcgccacctgtgccggtg
atgcactcgccaccgcggccagttacagtgaaggatcagcaggattggaagatcccaccg
tgcatttctaactggaaaaatccaaagggttacacaattccacttgataagaggctggcg
gctgatggaagagggctacaggaggtgcaaattaatgacaactttgcaaagctttctgaa
gcattgtatgtggcagaacagaaggcgagggaggcagtacagatgcgctccaaggtccag
agggaactgatgctgaaggagaaggagagaaaggagcaagagctgagggctcttgcccag
aaggctcgcatggagaggactggtgtcccatctgcgccatcagctgtgcctgctggtggt
ggcaggggagcagttgatgctatcgatgaagatatggatatggagcaaccacgtgaaccg
cgtgagcagcacagggagagtagagaagagagggaagcgaggattgagcgtgatagaatc
cgtgaggagcgcagacgtgagagggagagagagaggaggctggaagccaaggatgctgca
atgggcaagaagagtaagatcacgagagacagagatcgtgacatcagtgagaagattgct
ctgggtatggcaagcactggtggtgccaaaggtggtgaggtcatgtatgaccagaggctg
ttcaaccaggacaagggtatggactccgggtttgccacggatgatcagtacaacatctac
tccaaggggctcttcacagcgcagtctacgatgtctacattgtacagacctaagaaggat
ggtgattctgatgtgtatggtgatgcggatgaacagttggagaaggttatgaagactgag
aggttcaagcctgacaaggcttttaccggtgcttccgagaggactggcaagcgagacagg
cctgtggagtttgataagcaggaggagaacgatcccttcggtctggatcagttcttgact
gaggtgaagaagggaaagaaagctgtggagaagatcggaggcggaggcaccatgaaggca
agtggtgggtcctcaatgagggacgattatgatggaggatctgggaggtcctgcattaat
tttgaaagggggcgttga
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