Panicum virgatum (switchgrass): 120688520
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Entry
120688520 CDS
T07260
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00040
Pentose and glucuronate interconversions
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120688520
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
120688520
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
120688520
NCBI-ProteinID:
XP_039826803
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Position
9N:25463307..25469274
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AA seq
484 aa
AA seq
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MAGAPKSTGIALFPLLLLAAAAAASALPLLNSSVPDPAAVVADFHSKVASSRRRMQEAGG
GGGCMTGNPIDDCWRCAGTDWRQDRQRLADCGIGFGRNALGGKGGPLYVVTDSSDRDPVN
PAPGTLRHAVIQEGPLWIVFAADMTIRLSQELLVNSYKTIDGRGARVHIGAGGACITLQY
VSNVIVHNVHVHDCVPAGDADVRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALWRCAD
GLVDAIMGSTAITVSNSYFAHHDEVMLLGASDAYLPDSAMQVTIAFNRFGPGLVQRMPRC
RRGYFHIVNNDYTSWEMYAIGGSASPTINSQGNRYIAPTDPNAKEVTKRVETAEGQWTGW
NWRTEGDMMVNGAFFVPSGEGMEEIYDKASSTDPKSAALVDALTQNTGVLGDPRNDAAET
GYVGVNYAGVGNGRGGGGGDGGDGYGYLGMVYANGDGRGRRALPTLPLASSVITLVALGC
LRLL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcccccaaatccaccggcattgccctcttccccctgctgctgctcgccgcc
gccgccgccgcctcggcgctccccctgctcaactcctcggtccccgaccctgccgccgtc
gtcgccgacttccacagcaaggtggcttcgtcgcggcggcggatgcaggaggccggcggc
ggcggcgggtgcatgacgggcaaccccatcgacgactgctggcggtgcgcgggcacggac
tggcgccaggaccggcagcgcctggcggactgcggcatcgggttcggccgcaacgcgctg
ggcggcaagggcggcccgctgtacgtggtgacggactcctccgaccgcgaccccgtgaac
cccgccccgggcacgctccgccacgccgtcatccaggagggccccctctggatcgtgttc
gccgccgacatgaccatccgcctgagccaggagctcctggtgaacagctacaagaccatc
gacgggcgcggcgcgcgcgtgcacatcggcgccggcggcgcgtgcatcacgctgcagtac
gtgtcgaacgtgatcgtccacaacgtgcacgtccacgactgcgtccccgccggggacgcc
gacgtgcggtcgtcgccgacgcactacgggtggcggacgcggtcggacggcgacggcatc
tcgctgttcggcgcgcgggacgtgtgggtggaccactgcgccctgtggcggtgcgccgac
gggctggtggacgccatcatgggctccaccgccatcaccgtctccaacagctacttcgcg
caccacgacgaggtgatgctcctgggcgccagcgacgcgtacctgccggactcggcgatg
caggtgaccatcgccttcaaccgcttcggcccgggcctcgtgcagcggatgccgcgctgc
cggaggggctacttccacatcgtcaacaacgactacacgtcgtgggagatgtacgccatc
ggcggcagcgccagccccaccatcaacagccagggcaaccgctacatcgcccccaccgac
ccgaacgccaaggaggtgacgaagcgggtggagacggcagaggggcagtggaccgggtgg
aactggcggacggagggcgacatgatggtgaacggcgccttcttcgtgccctccggcgag
gggatggaagagatctacgacaaggcgtccagcacggaccccaagtccgcggcgctcgtc
gacgcgctcacgcagaacaccggcgtcctcggcgaccccaggaacgacgccgcggagacc
ggctacgtgggcgtcaactacgccggagttgggaacgggcgcggcggcggcggcggcgac
ggtggcgacgggtatggctacctcgggatggtctatgccaatggcgacggtcggggacgc
agagcgctgccgacgctgccgctggcttcttcggtgatcaccctcgtcgcgctcggatgc
ttgcgcttgttgtga
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