Panicum virgatum (switchgrass): 120688523
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Entry
120688523 CDS
T07260
Name
(RefSeq) endoribonuclease Dicer homolog 2a-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120688523
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120688523
microRNA pathway
RISC loading complex
120688523
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Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
120688523
NCBI-ProteinID:
XP_039826805
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Position
9N:18545887..18552749
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AA seq
766 aa
AA seq
DB search
MGGSAGAGACVADARGGGPPPEADEGAGGNAAEEEYQHGQPVYFPEELVDNWVSFSRRGV
YYCYNISLRWCLNTTATPADIILAVKCDMGPEFLCNSFNSGGVHVTIRYMSIVHLNQEQV
IFARRFQTTILSLLIGNGHSEVKDAIKYFHELQVSVGVVYLLLPSVSGKIDWCGIKFSTS
SVYDATEKDMGHCHSCKDADLLQTMDGPCCRCMLQNSVVYIPRDGKFYNITGFLDSNENN
PLHLRDKSVVGSERCGLCLTSESHPLLVASALFTVQNFLYKCYGKGKETSCRIAVKLPPE
LCRVVMAPVSTNILCSFSFVPSIMYRIQCLLLSAKLKIQLGPRMQQFNITALKILEALTT
KECQEEFSLESLETLGDSFLKYVTGQHLFSKYKHREGKLTSMRKKLVSNKTLCQLACNRN
LVGYIRGEEFNLKKWIIPGLGYDICGNTKCLFLLTNNMYALKEISIKRKRIADTVEALIG
AYLSASGEQAAFHFMKSLGMDLELHNEMQDERKIRTKSEEIIDVRSLETMLGYAFNDRSL
LIEALTHGSYNNAGPCYERLEFLGDAVLDHILTDYFYKQYYPGCTPALLTNLRKASVNNC
CYAHAAVKAGLHKHILHSSSKKMISDLENSGRSFSGPSHGWEPGIGLPEDLADLIESIAG
AIYLDSKHKKEVVWRAMRRLLEPLATPKTVELYPVSELKEICEHRKYPKPLYSPTRDNGV
GVTRVVAEVKAAGTVYYATGEGCNKKVAEILAAKALLQKLKAASVA
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgggcggctccgccggcgccggcgcctgcgtggctgatgcgcggggaggaggacctccg
ccggaagccgacgaaggggccggcggcaacgctgctgaggaggaatatcagcatggacag
cctgtctactttccagaggaactagtggacaattgggtgtctttttctcgtcgcggcgtg
tattattgctacaacatctccttgcgatggtgtttgaacacaaccgctactccagcagac
ataatattagctgtcaaatgcgacatgggtcctgaattcctctgtaactcatttaactcc
ggtggtgttcatgttaccattaggtacatgagtatcgttcatctaaatcaagaacaggtc
atttttgcgagaagatttcagaccaccattctttctttgctcattggcaatggccattcg
gaggtcaaagatgctataaaatactttcatgagctacaagtatctgtaggcgttgtctat
ctacttctgccttcagtttctggcaagattgattggtgtggtatcaagttctcaacctca
tcagtatatgatgcgactgaaaaagatatgggacattgtcattcttgtaaagatgctgat
ttactgcagacaatggatggcccttgctgcaggtgcatgcttcagaattctgttgtctat
atccctcgtgatggaaaattttataatattacagggttccttgactcaaacgaaaataat
ccgctgcatttgagagacaagagtgttgttggctccgaaagatgtggcctatgtttaacc
tctgaaagccacccactattggttgccagtgcactattcacagtgcaaaatttcctctac
aagtgctacggaaaagggaaagaaactagctgtagaattgctgttaagttgccacctgaa
ctctgcagagtagtcatggcgccagtgtcaacaaatattttgtgcagcttctcatttgtt
ccttccataatgtatcgtatccagtgtctgcttctttctgcaaagttgaaaatccagttg
ggcccgagaatgcaacagttcaacataacagctctgaagattttggaagcgcttacaaca
aaggaatgccaggaggaattttcactggaatcattagaaacacttggggattctttcctt
aagtatgttacaggccagcatctttttagcaaatacaagcatcgagagggcaagctaacc
tccatgagaaaaaaattggtctccaacaaaactctatgccagcttgcttgcaataggaat
cttgtggggtacattcggggtgaagagtttaatctgaaaaaatggatcattccaggactt
ggttatgacatatgtggtaacaccaaatgtttgttcctattaacaaataatatgtacgca
ctgaaggaaatatccataaaaagaaagagaattgcagatacagtcgaagccttgattggg
gcctatctcagtgcttctggtgaacaggcagcatttcatttcatgaaatcactaggaatg
gatttagaactgcataatgaaatgcaagatgaaaggaaaattagaacaaaatctgaagaa
atcattgatgtgagaagcttagagacgatgctcggttacgctttcaatgatcgttcactg
ttaatagaagcactgacacatggttcctacaataacgctggcccttgctatgagaggctt
gagtttcttggagatgcggtattggaccacatattaactgattatttctacaaacagtac
taccctggatgtacaccagcattgttgacaaatctacggaaagcttctgtgaacaactgt
tgctatgcacatgcagctgttaaagcaggattacacaagcatattcttcattcttcatca
aaaaagatgattagcgaccttgagaattcggggcggtcattttcaggcccatcgcatggt
tgggaacctggcattggtctacctgaggaccttgcagatttgattgaatcaatagctggt
gcgatttacctcgacagcaagcataagaaggaggttgtctggagagccatgagacgccta
ctggaacctcttgccaccccaaagactgtggaactgtacccggtgtcggaactgaaagaa
atatgcgagcacagaaaataccctaagccgttatattctccaactcgtgataatggagtt
ggagtaacaagggtagttgcagaggtgaaggctgcagggacagtgtactatgcaactgga
gaaggctgcaacaagaaagtggcggaaattttggccgcaaaggctctgctccagaaactg
aaggccgcatctgtggcatga
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