Panicum virgatum (switchgrass): 120688583
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Entry
120688583 CDS
T07260
Name
(RefSeq) ubiquitin domain-containing protein DSK2a-like
KO
K04523
ubiquilin
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120688583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120688583
03051 Proteasome [BR:
pvir03051
]
120688583
Membrane trafficking [BR:
pvir04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
120688583
Proteasome [BR:
pvir03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
120688583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
UBA
Rad60-SLD
STI1-HOP_DP
UBA_7
Rad60-SLD_2
Dsc3_N
TSP9
Motif
Other DBs
NCBI-GeneID:
120688583
NCBI-ProteinID:
XP_039826882
LinkDB
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Position
9N:55318770..55323606
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AA seq
570 aa
AA seq
DB search
MASGGDGAGSGESPPAAAGEAPAAAGATLHIRCANGSKFTVQADLAATVGAFKEVVAGSC
DVPAPQQRLIYKGRILKDEQTLESYGVETDHTIHLVRGVAAPAASGAPAAASPLASSTPS
SGPAGGLGGLFPGVGAPRSGRPSGLFGAGFPELEQVEQHLSQNPNLMREMMNMPAMQNLM
NNPDLIRNMIMSNPQLREIMDRNPDLAHVLNDPSVLRQTLEAARNPEIMREIMRNTDRAM
SNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTASNPFAALLGNQGSNQPGQPATNA
PIPGSESTTGTPAPNTNPLPNPWSTNAGGAQGAARSGPTSNARTGATGSLGGLGSPDLSS
LLGGLAGSQRSGAAGGLGGLGSADLGSMLGGSADASFLNQMLQNPAMMQMMQSIMSDPQT
MNQLLNFNPNARNLMESNTQLREMFQNPEFLRQLTSPGTLQQLLSFQQTLLGQLGQQQPS
QDGNNLGSATGTQGNPSLDTLMSMLSGLGSGGGLGVPNNSNVPPEELYATQLTQLREMGF
IDNAENIQALLATAGNVHAAVERLLGNLGQ
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggaggcgatggcgcagggagcggcgagtccccgcctgctgccgcgggggag
gcgccggccgcggcgggggcgacgctgcacatccggtgcgcgaacggctccaagttcacg
gtgcaggccgacctggctgccacggtgggcgcgttcaaggaggtcgtggccgggagctgt
gacgtgccggcgccgcagcagcgcctgatctacaagggccgtatcctcaaggacgagcaa
accctagaaagctacggcgttgaaacagatcacacaattcacttggtgcgtggtgttgcc
gcaccggctgcatcaggtgcacctgctgctgccagtccccttgcttcatctactcctagc
agtggcccagcaggtggcctgggaggcctatttccaggtgttggtgctccaagaagtggc
aggccatcaggtttatttggagcaggatttccagaattagagcaagttgagcagcattta
agccagaatcccaacttgatgagggagatgatgaatatgccagcaatgcaaaatctcatg
aacaacccagatttaatacgcaatatgatcatgagcaacccacagttgcgcgagatcatg
gatcggaatccagatcttgcccatgtgctcaatgacccgagtgtcctccgccaaactctt
gaagctgctagaaaccctgaaatcatgagagagatcatgcggaacacggacagagctatg
agcaacattgaatcttctcccgaagggtttaatatgctccgacgaatgtatgaaactgtc
caggagccattcctaaatgcaacaacaatgggcggggaaggcaacacagcctcaaaccca
tttgcagctcttcttggcaatcagggttctaaccaacctggtcaaccggcaacaaatgct
ccaattcctggttctgagtcaacaacaggaacccctgctccaaatactaatccacttcca
aatccctggagcaccaatgctgggggtgcacaaggagcagcacggtccggtcctactagc
aatgcaagaactggtgccactgggagcctgggagggttgggttcaccagatttgagtagt
ttgctcggtggtcttgctggcagtcaaagatctggtgctgctggtggtctaggagggttg
ggatcagcagatcttgggagcatgcttggtggttcagctgatgcttctttccttaatcag
atgctgcaaaaccccgcaatgatgcagatgatgcagagcattatgtctgatccacagacc
atgaaccagttgcttaacttcaacccgaatgcacgcaacctgatggaatcaaacactcag
ctgagggaaatgttccaaaatccagaatttcttcgccagttgacatcgccagggactttg
cagcaattactctcatttcagcagaccttattaggacagcttggtcaacaacaacctagc
caggatggcaacaatttgggcagcgccacaggtacccaaggaaaccctagccttgacacc
ttgatgagcatgctcagcgggcttggatcaggaggtggccttggtgttccaaataattcc
aatgtgccgccggaggagctgtatgcaacacagcttactcagctccgagaaatgggtttc
attgacaatgcggagaacatccaagcactgcttgctactgctgggaatgtacatgccgcg
gtggagcgcctccttggtaatcttggccagtag
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