Panicum virgatum (switchgrass): 120688597
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Entry
120688597 CDS
T07260
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120688597
03015 mRNA surveillance pathway
120688597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120688597
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120688597
5.6.2.5 RNA 5'-3' helicase
120688597
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120688597
mRNA cycle factors
Common to processing body (P body) and stress granule
120688597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
nSTAND3
Helicase_RecD
ATPase
SRP54
PhoH
AAA_16
Ribosomal_S13_N
AAA_32
AAA_22
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
120688597
NCBI-ProteinID:
XP_039826898
LinkDB
All DBs
Position
2K:57074786..57085460
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AA seq
1271 aa
AA seq
DB search
MATQPPSAAAADLYETASQPDPSASAAGDAYTFLEFNTQGDDFDYPDFPELSQPPPRSAP
LPPVAATASSSSSWPAPPPPPPDAASPEPDLAPQDVPTPPASSSSPSPRSASKARTSAAA
DGLTSGVAALSFEEPVGAGAGDDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKWF
CNSRGNTSGSHIVNHLVRAKHKEVYLHKDSPLGETILECYNCGCRNVFLLGFISAKSENV
VVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQISAQQINK
VEELWKTNPDASLEDLEKPGVDDEPQSVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQ
SKDNVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYPGDSSHPTWQSVGHVIKL
TAQEEVALELRASQGVPTELSIGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHL
LGHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAAI
VYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQV
RHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKSLKRATEREILQSADVICCTCVGAGDP
RLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQS
LFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVPN
RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYI
VNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVAL
TRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDR
RLFLGGGQGVMHGANFGSGASPAADKRSGRGKGQSFVPYGTPNGVPKPGVHPAGYAVPRM
PFPPFPGAPHSQPYAIPTRGMHGPIGAVPPVPQPGSRNFGAPRSNTGGPIGGHLAHQQNS
QQAMGGIGSNFNYTGLENPSSQPSGGAQMSQTGLMTQMPVQGLSQTFRDGFSIGGMSQDF
FGDDFKSQGSHVPYNIADFSTQASQGGYGVEFTQAPQSGYSGNYMNQNAHPGYSHIGTTN
DIVSQDHMAHGSHGVFTQAGYSDPSQDESSQMHYGIASAGPLQSQNMMNPLYSQSYAHYN
TQPQSLQPPQQ
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccctccgccgcggccgccgacctgtacgagacggcctcgcagccg
gacccctccgcctccgccgccggcgacgcctacaccttcctcgagttcaacacgcagggc
gatgacttcgactatccggacttcccagagctgtcccagccgccaccacgatccgcgccg
ctgccgcccgtcgccgccaccgcgtcatcgtcatcgtcctggccggccccgccgccgccg
ccgcccgacgcggcctccccggagcccgatctcgcgccgcaggacgtccccaccccgccg
gcctcctcctcctcaccgtcgccgcgctccgcgtccaaggcgcgaacgtctgccgcggct
gatgggctcacctccggggtcgccgcgctcagcttcgaggagcctgtaggcgctggcgcc
ggggacgacgggtacgactatggcaagggcgacttcgtggagcacgcctgccggtactgt
gggatccacaaccccgcctgcgtggccaggtgcaacgtgccctcctgccgcaagtggttc
tgcaactcgcgggggaacacctctggctcccacattgtcaaccacctggtcagggccaag
cataaggaagtgtaccttcacaaggatagccctttgggagaaacaattcttgaatgctat
aactgtggttgtcggaatgtatttcttcttgggtttatctcagcaaagtcggagaatgtt
gttgttcttttgtgcagagagccttgtttgagtgttaatgcattgaaggatatgaattgg
gatcttagtcagtggtgtccacttattgatgacaggtgtttcttgtcatggcttgtaaag
gtaccctcagagcaggagcagctgagagctcgtcaaattagtgctcagcaaattaacaaa
gtagaagagctctggaagacaaatcctgatgcctcccttgaagatcttgaaaagcctggt
gtagatgatgaacctcagtctgtggttttgaaatatgaagatgcttatcagtatcaaaat
gtttttgctccgctgataaagctcgaggctgattatgacaagatgatgaaagagtcacaa
agcaaggataatgtaactgttcggtgggatattgggctgaacaagaagcgtgtagcttac
tttgtgtttccaaaggaagataatgagttgaggcttgtgcctggagatgagctgcgcttg
agatatcctggtgatagttcacatcccacatggcagtctgtgggacatgtgattaagctc
actgcccaagaggaggtggcacttgagcttcgtgctagtcagggggtacccactgaacta
agcattggattcagtgtggattttgtttggaaaagtactagctttgatagaatgcaagga
gcgatgaaaactttcgccgtagacgagacaagtgtcagtggatacatataccatcacctt
ttgggacatgaagtcgagcatcaaataatacgtaatactctaccaagacgctttggcgca
ccaggacttccagaactaaatgcttcccaggttttagcagttaaaagtgtcctccagaag
ccagttagtttgattcaaggtccacctggcactggaaaaactgtcacatctgctgcaatt
gtttatcacatggcaaaacaaggtcaaggacaggttcttgtatgtgcaccaagtaacgtt
gctgttgatcaactggcagagaagataagctcaactggtctcaaggttgttaggctgtgt
gcaaaatctcgagaagctgtttcatctcctgttgagcatcttacacttcattatcaggtt
aggcaccttgatacatctgaaaagagcgaattgcacaagctacagcaactgaaagatgag
caaggtgaattgtccagtagtgacgagaagaagtacaagtcactaaaacgtgccactgaa
agagagatactgcaaagtgctgatgtcatttgttgcacctgtgttggtgctggagatccc
cgtctttcaaacttccgtttccgacaagttcttattgacgagtccacacaggcaacagaa
cctgaatgtcttattcctttggtgcttggtgtcaagcaggtcgttcttgttggagatcat
tgtcaattgggtccggtcatcatgtgcaaaaaagcagctcgtgcaggtttagcacaatct
ctgtttgaacgccttgttatccttggagtgaagccattcaggctacaggtccagtataga
atgcacccttgcctctctgaatttccgtccaactgcttctatgaaggcacactgcaaaac
ggagtaactgttaatgagaggcaatcatctggaattgattttccttggcctgttccaaat
cggcctatgttcttctatgtgcagatgggacaagaagagatcagtgctagtgggacatca
tatctgaatagaactgaagctgcaaatgttgaaaaaattgtaacaacatttttaagaagt
ggtgttgtaccaagccagattggagttatcacaccttatgaaggacaaagggcatacatt
gtaaattacatgtcaaggaatggctctcttcgccaacaactttacaaggaaatcgaggta
gctagtgtagactcatttcagggaagagagaaagactacattattctgtcgtgtgttaga
agcaatgagcaccagggaattgggtttctcaatgatccacgcaggttaaatgttgcgcta
actcgtgcacggtatggcatagttattcttggtaacccaaaagtattgagcaagcagccc
ctttggaatagcttgttgacacattacaaggagcatgagtgtctggtagaaggaccttta
aacaacttaaagcagagtatggtgcaatttcagaagccaaaaaagatctataatgaccgg
agattgttcctgggcggtggtcaaggtgttatgcatggagccaattttgggtctggagcg
agcccagcagcagataaaagaagtggtagggggaaaggacaatcatttgttccttatggc
accccaaatggagttcctaaacctggtgtgcacccagcaggctatgctgtacctcgtatg
cctttccctccatttcctggggctccacattcgcaaccatatgcaatcccaacccgtgga
atgcatgggcccattggagctgttccaccggtgcctcagcctggaagtagaaactttggg
gcacctcgttctaatacaggtggtcctattggtggccaccttgctcatcaacaaaactct
cagcaggctatgggtggcatagggtccaactttaactacactggcttggagaatccaagt
agtcagccttctggtggagcccagatgtcccaaacaggattaatgacacagatgcctgtc
caaggactcagtcaaaccttccgtgatggtttttccattggtgggatgtctcaggacttc
ttcggagatgatttcaagagccaaggatctcatgtgccttacaacattgcggatttctct
actcaggcttctcaaggtggttatggtgttgagtttactcaagcaccccaatctgggtac
tctgggaattatatgaaccaaaatgcacatccaggatactcccacattggtacaaccaat
gacatcgtatctcaggatcacatggcccatggatctcatggagtgtttacacaagcggga
tatagtgatccctcgcaagatgagtcatctcagatgcattatggaattgcatctgctggc
cctctccagtcacagaacatgatgaaccccctatactctcaatcctatgcccactataac
acccaaccacagtctcttcaacctcctcaacagtga
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integrated database retrieval system
