Panicum virgatum (switchgrass): 120688617
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Entry
120688617 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 20-like isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120688617
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120688617
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120688617
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120688617
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120688617
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
120688617
NCBI-ProteinID:
XP_039826928
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All DBs
Position
9N:complement(50614620..50621693)
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AA seq
887 aa
AA seq
DB search
MAAVAQMPVEPAPVVADAVDEQLPVAAEAVVDEPLADAGDAVGTPPPAAADGAEAAAAAM
PVVHPPPAPAEQKIQYVKDGGEDALPTEILKVIESIEVPLPSLAGDQNPCDMVTDVKENE
TKNCSLALPSIDSESYPTKQLEETVQPLGYLQQEAMVASDNNSNESEKQVPTQLCPSSQQ
QIPMLGCAGNEENQDVSPMRSSMVLIDNRPPSYTDISDIDDLSSDSPTRNSNDDDSDHND
DFYHYDPMCRYWYHDRYRLIHRRQRRNLGYSCFCNARRNRWLGDYPCIPDLINPCNPMAS
RDTEPWRRWSPPEPDHGKKRYNVDSVHTGLMSRWSSTEPYCEKKRYSVGAGLSNPNWWTC
FLNCILQCMVHTVPLVLKLRKADHPDPCPRASVGFCCFCTLKLHADESIRLSGSAFYPES
FVNHLKSISSNFESGVQQDAQEFFCDLLEKLDKASVTPRSSLDEPSSTEEGGIAKEIFGG
RLKSQLRCPECNRCSDKSEPFLDLSLEVNMVESLMDALRSFTKVELIEDFMCDGCKSRVN
MEKQFKVEQAPEVLVIHLKRFTNSGGKILDKVKYPLELDINSFMSSSDDTPQKYDLYGVV
VHHGIYGRGHYVCYIRSSVDDWYEFNDDKICRYSEDSVLDSAAYLLFYVKQGSSPWFSTL
LEKEDDFPKDDSVSLAEQGTSEIAPVKNKFEESTCSRGQDNSGYCLVGPAEENGNRPGLP
DFSQDIQCNGNGDALSDASDKMAEGCCLGGMSGGTPELTCLTESDDKNGHAGGFVEPWEK
EDVSPIGSLDTDEMNPSTHGSSEVDPAVTQGGSPPKSENICSLLQLSHKCDDNCHCMNFS
QEDETGGCSGTPSMGMCTSENETLDFKSNHEFGDSQVSANKGKCIQP
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcgcgcaaatgccggtcgagcctgcgccggttgtcgcggacgcggtcgac
gagcagctgccggttgccgcggaagccgtcgtcgacgagccgctggcggatgccggggac
gccgtcggcacgccgccgccagcggccgcggacggcgcggaggccgccgccgccgcgatg
ccggtcgttcatcctccgccggcgccggcggagcagaagattcagtatgtgaaggatggt
ggagaagatgctttgccaactgaaatcctgaaggttattgaaagcattgaggttccgctc
ccttctcttgctggtgaccagaacccatgtgacatggtcactgatgtgaaggaaaatgaa
actaaaaattgttcgttggcattaccttcaattgatagtgaatcctatcctacaaagcaa
ctagaggagacagttcagcctttggggtatttacagcaggaagccatggttgcttctgac
aacaatagcaatgaaagtgagaaacaagtaccaacacaactatgtccttcaagccaacaa
caaatacctatgttgggctgtgctggaaatgaagaaaatcaagatgtttcacctatgagg
tccagtatggttttaatagacaaccgcccaccgtcatatactgacatttcggacattgac
gatctttctagcgattcccctacaaggaactctaatgatgatgatagtgatcacaatgat
gatttttaccattatgatccaatgtgtcgttactggtaccatgaccgttatcgacttata
catagaagacagagaagaaacttgggatattcgtgtttttgtaatgctagaagaaaccgt
tggcttggtgactacccatgtatccctgatttaataaatccatgcaatcctatggcttct
cgtgatactgagccttggagacgttggtcccctcctgaaccagaccatggaaagaaaaga
tacaatgtggattctgttcatactggacttatgagtcgttggtcctctacagaaccatat
tgcgagaaaaaaagatacagtgtgggtgctgggctatccaaccctaattggtggacatgt
tttcttaattgcatcctccaatgtatggttcataccgttccccttgtattgaagctccgg
aaagctgatcacccagatccatgtcctcgtgcttctgttggattctgctgtttttgcact
ctgaaactgcatgctgatgaatctatcaggctttctggaagtgcattctaccctgagagt
tttgtaaatcacttgaaatcaatttcgtcaaattttgagagtggagtacagcaagatgcg
caggagttcttctgcgacttacttgaaaaattggataaggcgtccgtcactcccaggtcc
tcattagacgaaccctcttcaactgaagaagggggcattgcaaaagaaatatttggaggc
cgcctaaaaagccagctgcgttgcccagagtgcaaccgttgctcagataaatccgaacct
tttctggatcttagcttggaagttaacatggtggagagtctgatggatgcattgcgatct
tttacaaaagttgagttgattgaagacttcatgtgtgatggatgcaaatctcgtgtgaac
atggaaaaacagttcaaggtagagcaggcgcctgaagttcttgtaatccatctaaagagg
ttcactaattccgggggtaagattttggacaaggtcaagtacccgttagagctggatata
aactccttcatgagctcctcggatgatacaccacaaaagtatgatctatatggagttgta
gtacaccatggtatatatggcaggggtcactatgtttgttatatccggtcatccgtagac
gattggtatgaattcaatgatgataagatatgcagatattctgaggatagcgttttggac
agtgcagcatatcttcttttctatgtgaagcaaggttcatccccctggttctccaccttg
cttgagaaagaagacgattttccaaaggatgattcagtaagtttggcagaacaaggtacc
agtgaaattgctcccgtcaaaaacaaatttgaggagtcgacatgttctcgtgggcaagat
aattcaggttactgcttggttggaccagcagaggagaatggaaacaggcctggtttgccg
gacttctcccaggacatacaatgtaatggaaatggtgatgccttgtcagatgcatcagat
aagatggcagaaggttgttgcttgggtggaatgtcaggaggaacaccagaacttacctgc
cttactgaatcagacgataagaatggccatgctggtgggtttgtggagccttgggagaag
gaagatgtcagcccaatcggatcactggacacggatgaaatgaacccaagcacacatgga
tcttcagaagttgatcctgcagtcacacagggaggttcaccaccaaagagtgagaacatc
tgcagcttactccaactgtcacataaatgtgacgataactgccattgcatgaatttctca
caggaagatgaaaccgggggttgttctggaacaccatctatggggatgtgcacatcagag
aatgaaacattagacttcaagtccaaccatgaatttggggacagccaggtcagcgctaat
aagggcaagtgcatacagccctag
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