Panicum virgatum (switchgrass): 120688621
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Entry
120688621 CDS
T07260
Name
(RefSeq) ubiquitin domain-containing protein DSK2a-like
KO
K04523
ubiquilin
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120688621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120688621
03051 Proteasome [BR:
pvir03051
]
120688621
Membrane trafficking [BR:
pvir04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
120688621
Proteasome [BR:
pvir03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
120688621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
UBA
Rad60-SLD
STI1-HOP_DP
UBA_7
Dsc3_N
Rad60-SLD_2
TSC22
HEAT_HEATR1
Motif
Other DBs
NCBI-GeneID:
120688621
NCBI-ProteinID:
XP_039826933
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Position
9N:80254634..80259276
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AA seq
532 aa
AA seq
DB search
MGGGDADAGGEHAAAQATLHIRCTNGSKFAVRADLGATVGAFKAIVAESCDVPAPQQRLI
YKGRILKDEQTLASYGVETDHTIHMVRGAAPPLASTAPAANQETSTTAPASSPAAGLGGL
LPGLGATGAANSGGLGLFASGLPELDQMQQQLADNPNLMREIMNMPLMQNLMNNPDLIRN
IIMNNPQMRELIDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNIESSPE
GFNMLRRMYETVQEPFLNATTMGGEGDRNANPFAALLGNQGTNQTRDPAANAPTTASDPA
AGSPAPNTNPLPNPWGSNAGSAQGAARPPPASNTNTRTATAGGLGGLGSADLGSVLGGGA
DASFLSQVLQNPTMMQMMQNIMSNPQSMNQLFNMNPNVRNMMESNTQLREMFQNPEFLRQ
LTSPETLQQLISFQQSLMSQLGQQAGQERTQSGTGAGNVNLNTLMNMFSGLGAGGGLGVP
NAPNVPPEELYATQLTQLQEMGFFDTQENLRALIATAGNVHAAVERLLGNLG
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgggcggaggggacgccgacgccggcggcgagcacgcggccgcgcaggcgacgctgcac
atccggtgcaccaacggctccaagttcgccgtgcgggccgacctgggcgccaccgtcggg
gcgttcaaggcgatcgtcgccgagagctgcgacgtgccggccccgcagcagcggctgatc
tacaagggccggatcttgaaggacgagcaaaccctagccagctacggtgtggagacagat
catacgattcacatggtacgaggtgctgcaccaccactagcatcaactgcacctgcagct
aaccaagaaacttccactactgctcctgccagttccccagcagcaggattgggtggcttg
ttgccaggtctgggtgctacaggggctgctaatagtggagggttgggtttgtttgcatct
ggcctcccagaattagaccagatgcaacaacagctagccgacaaccccaacttgatgagg
gaaataatgaatatgccactcatgcagaatttaatgaataatcctgatctcatacgcaat
ataataatgaacaatcctcaaatgcgtgagctcattgatcgcaatccagatcttgcccat
gtcctcaatgatccaagcatcctgcgccagactgttgaagcagctaggaatcctgaactt
atgagggagatgatgcggaacacagatagagccatgagcaacattgaatcttctccagaa
ggtttcaacatgctccgtcgcatgtatgaaactgtccaagagccttttctgaatgcaacg
acgatgggtggtgagggtgatcgaaatgcaaacccatttgcagctcttctaggaaatcag
gggactaaccaaacaagggacccagctgcaaatgcaccaactacagcatcagaccctgca
gcagggtctccagccccaaatactaatccacttccgaatccctggggctcaaatgctggg
tctgcccaaggagcagcaaggcctcctcctgctagcaacaccaacacaaggactgctaca
gcaggtggtctaggagggttgggttcagcagatttaggaagtgtgcttggtggtggcgct
gatgcttccttcttgagtcaggttttgcaaaacccaactatgatgcaaatgatgcagaat
attatgtctaatcctcagtccatgaatcagttgtttaatatgaacccaaatgtacgtaat
atgatggaatcgaatactcaactgagagaaatgtttcagaatccagaatttcttcgccag
ttgacgtctcctgaaacattgcagcaattaatttcattccagcagtccttgatgtcacaa
cttggccaacaagctggacaggagcgtacacaatcaggcactggtgcaggcaatgtcaac
ctcaacaccttgatgaacatgttcagcgggcttggtgctggtggtggcctaggtgttcca
aatgcccctaatgtacctccagaagaactgtatgcaacacagctaactcagctccaagaa
atgggtttctttgacacacaggagaatctccgagccttgatcgccaccgcaggaaatgtt
catgccgccgtggagcgacttctcgggaatttgggttaa
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