Panicum virgatum (switchgrass): 120688626
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Entry
120688626 CDS
T07260
Name
(RefSeq) calmodulin-binding transcription activator 3-like isoform X1
KO
K21596
calmodulin-binding transcription activator
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120688626
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Other transcription factors
Others
120688626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CG-1
Ank_2
IQ
TIG
Ank
Ank_4
Ank_3
TIG_plexin
Motif
Other DBs
NCBI-GeneID:
120688626
NCBI-ProteinID:
XP_039826949
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All DBs
Position
9N:76078561..76086211
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AA seq
1024 aa
AA seq
DB search
MAEARRYAIAPQLDVDQILKEAQHRWLRPAEICEILRNYRNFCIAPEPPNRPPSGSLFLF
DRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENENFQRRSYWML
EEDFMHIVLVHYLEVKGGKSSSRIRGHDDMLQAARTDSPLSQLPSHTTEGESSVSGQATE
YEETESAYIYSGGAGYHPFSWTQQHENGGGPVMGASILSSYIPAPFVGNHQGFPATETTT
YLPVSLNEPALGIALNGADNQLDQSSLNGLPDQGVHRMPPPLITDPSKQFPFTEGPGIES
FTFDEVYNGLGIKDADTVDTDQGSLWQLPGAISSFPTEDSFQQNGRSLEETINYPLLKTQ
SSGLSDILKDSFKKSDSFTRWMNKELGEVDDSQIRSSSGVYWNSEETDNIIEASSCDQLD
QFTVDPVLAQDQLFSISDFSPSWTYVGSKARVLITGRFLKSDEIQRWKWSCMFGEVEVPA
EISADGTLRCYSPSHKPGRVPFYVTCSNRLACSEIREFEFRPSNPKHMDVPSPHDDVKKT
CLKMRLDDLLSLGQDEYQAIVSNPTKEMIDLSKKISSLMTDNDSWSELLKLACDNELATD
DKQDQFFENHLKEKLHIWLVHKAVDGGKGPSVLDEEGQGVLHLAAALGYDWAIRPTISAG
VSINFRDAHGWTALHWAAFCGRERTVVALIALGAAPGALTDPTLDFPTGSTPADLASANG
YKGISGFLAESALISHLQTLDLKETMGSNASEISGLPGIGDVIERRASPLAGEGLLAGSM
GDSLGAVRNAAQAAARIYQVFRMQSFQRKQAVQYEDDNGAISDDRALSLLSVKPSKPGHL
DPLHAAATRIQNKYRGWKGRKEFLLIRQRIVKIQAHVRGHQVRKHYRKIIWSVGIVEKII
LRWRRKGAGLRGFRSTEGAVEGTSSSHSDLIQNKPAQDDCDFLQQGRKQTEERLQKALAR
VKSMVQYPDARDQYQRILTVVTRLQESQALQEKMLESSTDMDEGFVMSEFQELWDDDIPM
PGNI
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcacggcgctacgcgatcgcgccgcagctagatgttgatcagatattgaag
gaagcacaacaccgttggttacgacctgcggagatttgtgaaatacttagaaactacaga
aatttctgtattgccccagaaccaccaaatagacctccaagtggttcgctttttttgttt
gatcgaaaagttttgaggtatttccggaaggatggccataattggaggaagaaaagagat
ggaaaaactgtcaaagaagctcatgaaagattaaaatctggaagtattgatgtgcttcac
tgctactatgctcatggggaagaaaatgaaaactttcagaggaggagctattggatgttg
gaggaggattttatgcacattgtgcttgtacattatctcgaagtcaagggtggcaaatca
agttctcgtattagagggcacgatgatatgctgcaagctgctcgtacggatagtccttta
agtcagttgccttcacatactacagagggtgaaagctctgttagcggacaagccaccgaa
tatgaggaaacagaatcagcatatatttattcgggaggagccggataccaccctttctct
tggacgcagcagcatgaaaatggaggtggacctgtgatgggagcttctattttgagctcc
tacattcctgcaccgtttgtaggtaaccatcaaggcttccctgctacagaaactactaca
tacttaccagtttctcttaatgagcctgctcttggaattgcattaaatggggctgataat
cagttggatcaatcatcattgaatggcctacctgaccaaggggtccatcgaatgcctcca
cccctaattactgatccctccaaacaatttcctttcactgaaggacctggaatcgaatcc
ttcacatttgatgaagtatataatggattgggtatcaaggatgcagatactgtagatact
gatcaaggctcactgtggcagcttccaggtgctatcagctcgtttcctacagaggacagt
ttccaacaaaatggtagatctttggaggaaactatcaattaccctctcttgaaaactcag
tcatctggtctctctgatatcctgaaggacagctttaagaaaagtgatagttttacgaga
tggatgaacaaagaacttggtgaagtagatgattcccaaattaggtccagttctggagtg
tactggaacagcgaagagactgacaatatcattgaagcatcaagttgtgatcagttggat
caattcactgttgacccggtgcttgcacaagaccagctgtttagtatatctgatttttct
ccaagctggacatatgtgggctccaaggctagggttctcattactggtagattcttaaaa
tctgatgagatccaaagatggaagtggtcatgcatgtttggagaagtcgaagttccagca
gagatttcagctgatggaactctcagatgctattctccgtcacacaaacctggcagggtt
cctttttatgttacatgctccaacaggttggcctgcagcgaaatccgagagtttgagttc
cgacccagtaatcctaaacacatggatgtcccaagtccacatgatgatgtgaagaaaaca
tgtctcaagatgcgtctagatgaccttttgtctttgggacaagatgagtaccaggcaata
gtatctaaccccacaaaggagatgattgatttgagcaagaagataagctccctgatgaca
gacaacgattcctggtccgagttgctaaagttggcttgtgataacgagcttgccactgat
gataagcaggatcagttctttgaaaatcacttgaaagaaaaattgcatatctggcttgtc
cacaaagcagttgatggtggcaagggccccagtgtgttagatgaggaagggcagggtgtg
cttcatctggcagctgccctaggatatgattgggctataaggccaacaatttctgctggt
gtgagcataaatttcagagatgctcatggatggactgcactccattgggctgcattttgt
ggcagagagcgaacagttgtggcacttatcgcacttggtgcagctcctggagctttgaca
gatccaacgctagattttcctacaggaagcacaccagctgatcttgcgtcagctaatggg
tacaagggaatttctggtttcctggctgagtctgctttaataagtcatctccagaccctc
gatcttaaggaaaccatgggaagcaatgcgtcagaaatatctggtctgcctggtattgga
gatgttattgaaagaagagcatcaccattagcaggtgaaggtcttctagctggatccatg
ggagattcactaggagctgttcgaaatgctgcccaagctgctgctcgtatatatcaagtt
ttcaggatgcaatccttccagagaaagcaagcagttcagtatgaggatgacaatggtgcg
atatcagatgatcgtgccctgtcactcttatctgttaaaccatccaaaccagggcacctt
gatcccctacatgctgctgcaactcgaatacaaaacaagtaccgtggatggaagggaaga
aaggaattcctgcttattagacagcgcatcgtcaagatccaggctcatgtgcgaggtcac
caagtgagaaagcattatcgcaaaatcatttggtctgttggaatagtagagaagatcata
ttgcgctggaggcgaaaaggggctggtttgcgcgggtttcggtctacagaaggtgcggtg
gagggcactagcagcagccatagcgatttgatccaaaataaacctgctcaggatgattgt
gatttcctgcaacaaggaaggaagcagaccgaagaaaggctgcagaaagctcttgccaga
gtgaagtccatggttcagtacccagatgctcgggatcagtatcagaggattctgactgtc
gtcacaagactccaggaatcccaggctttgcaagaaaagatgctcgagtcgtctaccgat
atggatgaaggcttcgtgatgagtgagttccaagagctgtgggatgatgacataccaatg
cccggcaatatctag
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