Panicum virgatum (switchgrass): 120688638
Help
Entry
120688638 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120688638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120688638
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120688638
Spliceosome [BR:
pvir03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120688638
Complex B
120688638
Complex C
U2 SnRNP specific factors
120688638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120688638
NCBI-ProteinID:
XP_039826966
LinkDB
All DBs
Position
9N:complement(66777293..66782206)
Genome browser
AA seq
766 aa
AA seq
DB search
MSKRPKLEGFSIPRPTSYSFERSQPVPRLYRPTDDPDLDDIAFSDDAPTDAPASAAAASK
SEDGEEIDPLDAFMAEIQEEIRAPPPPPKPEALRRADSDDDEDDPVESFLRAKKDAGLAL
AADAMRAGYDSDEEVYAAAKAVDAGMMEYDSDNPIVVDKKKIEPIPALDHSTIEYDAFTK
DFYEEKPSISGMSDQEVADYMKSLAIRVSGFDVPRPIKNFEDCGFPVPLMHAIAKQAYEK
PTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVICAPT
RELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCEVVIATPGRLIDLLKMKA
LKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILTD
PIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDGDVLVFASKKARVDEIE
KELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVLVATDVAARGLDIKSIKTVVNFDI
AKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEARFAGELVHSLIAAGQDVPNELMDLAMK
DGRFRAKRDSRKGGKKGGKGKGGGGGAGRGRGVRGVDFGLGIGYNAESGSQVPAPRTAAV
NSLKTGMMQQFKSSFVSGSSNTPSSSAPSFVRPALRGFVSGGTIGGDARPAQSAPSFVPA
SQPAQSALSFVPASQPAGNSNENGNQNPESSWDRSRERKRPSGWDR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcggccaaagctcgaggggttcagcatcccgcggcctacctcctacagtttc
gagcgctcgcagcccgtacctcggctctaccgtcctactgacgacccggacctcgacgac
atcgccttctccgacgacgctcccacagacgcccccgcctccgctgcggcagccagcaag
tcggaggatggggaggagatcgacccgctcgacgccttcatggcggagatccaggaggag
atccgcgcgccgcccccgccgcccaagccggaggcgcttcgccgagcagactctgacgat
gacgaggatgaccccgtcgagagcttcctgcgggcaaagaaagacgccgggctcgcgctc
gccgccgacgctatgcgcgccggttacgactccgacgaggaggtctacgccgctgccaag
gccgtcgacgccggcatgatggagtacgactccgacaaccccatagtcgtggacaagaag
aaaatcgagcccataccagcactggaccactcgaccatcgagtacgatgccttcaccaaa
gatttctatgaggagaagccgtcaatttcaggtatgagtgaccaagaagtggcagattat
atgaaaagtttggcaattagggtttctggttttgatgtgccaaggccaataaaaaacttc
gaggattgtgggtttcctgtaccgttaatgcatgctattgccaagcaggcttatgaaaaa
ccaacaacaattcagtgccaggctttacctatcgtactttcaggcagagatatcattgga
attgcaaaaactggttcaggcaaaactgcagcttttgtactcccaatgattgtacatatt
atggatcagcctgaacttgagaaagaagaaggaccaataggagtgatttgtgctccaaca
agagaactggcccatcagatatatctcgaagctaagaagtttgcaaaaccttacaacctt
cgagttgccgctgtatatggtggggtttccaaatttgaccagtttaaagaactgaaagca
ggctgtgaagtagtcattgcaaccccagggagattaatagacttgctgaagatgaaggca
ttgaagatgttcagggcaacttatttggttcttgatgaagctgatcgcatgtttgatctt
ggatttgagccacaaataagatccattgttggtcaaatcagaccagaccgacaaacctta
cttttttccgcaacaatgccatacaaagtggagcgtttggcaagagaaatattgactgat
cctattagagttacagttggtcaagttggcagtgctaatgaagacattaaacaagttgtc
aacgtactcccttctgatgctgagaaaatgccttggcttttggagaaattgcctgggatg
attgatgatggagacgttcttgtatttgcatctaagaaggctagagtggatgagatagag
aaagagttgaatcagagaggattcagaattgcagcacttcatggtgacaaggatcaagct
tctcgtatggagaccctacagaagttcaaatctgggacctaccatgttctggttgcaact
gatgttgctgcaagaggtcttgacattaagtcaattaaaacagttgttaactttgatatt
gcaaaggagatggatatgcatatccaccgtattggaagaactggccgtgctggggataaa
gatggcactgcatacactctgattacacagaaggaggcacgctttgctggtgaattggtt
catagtttgattgctgctggtcaggatgtacccaatgaactcatggatctggctatgaag
gatggaagatttagagcaaaacgggactccaggaaaggtgggaaaaaaggtggcaaagga
aaaggtgggggtgggggtgctgggcgcggtcgtggtgtgcgaggagttgattttggcctt
ggcataggttacaatgctgaatctggttcacaagtgcctgctccgagaaccgctgctgta
aattcgttgaagacggggatgatgcagcaatttaagagcagctttgtatctggatcttcg
aatacaccaagcagcagtgcaccttcctttgtaagaccagcacttcgcggctttgtatct
gggggcaccataggaggggacgcgcggccagcacaatcagccccctccttcgtccctgca
tcccaaccagcacagtcggccctctccttcgttcctgcatcccagcctgcaggaaatagc
aatgaaaatgggaaccaaaatccagaaagttcatgggatcggtccagggagagaaaacga
ccatcgggttgggatcgctag
DBGET
integrated database retrieval system
