Panicum virgatum (switchgrass): 120688720
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Entry
120688720 CDS
T07260
Name
(RefSeq) protein argonaute 12-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120688720
03036 Chromosome and associated proteins [BR:
pvir03036
]
120688720
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120688720
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120688720
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120688720
microRNA pathway
RISC loading complex
120688720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
PAZ
ArgoMid
ArgoL2
ArgoL1
Motif
Other DBs
NCBI-GeneID:
120688720
NCBI-ProteinID:
XP_039827040
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Position
9N:12935579..12942563
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AA seq
697 aa
AA seq
DB search
MAVRLAVVWNAGGVTINYQSLRATQMGLSLNIDISATAFYKAQPIIDFALECLNIRDASR
RLTDQDRIKLKKALKGVRVVATHRHDKTVRYRITGLTAIPMNDLTFDQDGTRVSVVQYFK
RQYNYCLKCIHWPCLQAGSDSRPIYLPMEVCNILEGQRYSRKLNERQVTSILRMACERPT
QRQSSILEVVSRNNYSNDYCAKEFGIKVTNQLALVDARVLPSPRLKYHDSGREKVCNPLI
GQWNMNNKILINGGSIKYWTCVTFASRLHLNDVRMFCNNLVGVCNNMGMQMNGRPCVDIG
QVRPDNLEAALRNIHGQSAKVISQQGVTGQQLELLIIVLPDANASVFYGRAKRLCETELG
AITQCCLPKNVQKGGQQYLQNLALKINVKVGGRNTVLEDALHRRMHLLTDLPTIIFGADV
THPAPGEDASPSIAAVVASMDWPEVSKYICLVSSQGHREEIITDLFTQVKDPQKGLIHGG
MIRELLVSFYRANGKRKPGRIIFYRDGVSEGQFSQVLLYEVDAIRKACASLEEGYLPPVI
FIVVQKRHHTRLFPEDHHARDQTDRSGNILPGTVVDTKICHPSGFDFYLCSHAGIQGTSR
PTHYHVLFDENNFTADAMQTLTYNLCYTYARCTRSVSIVPPAYYAHLAAFHARHYMDDGL
SDQGSSSAASSRPHDHAVLVKQLPKVKENVRQFMFYC
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgagattggcagtggtgtggaatgctggaggggttactatcaattatcaaagt
ttacgcgctacacagatggggttgtccctaaatattgatatttctgcaactgcattttac
aaggctcaacccattatagactttgcattggagtgtctcaacatccgtgatgcttcaagg
cggttgactgaccaggatcgcataaaactgaagaaagccctcaaaggagtccgggttgtg
gcaacacaccgccatgataaaacagtccgctacaggattacagggctaaccgcaattccc
atgaatgatttaacgtttgatcaagatgggacaagggtttcagttgtccagtactttaaa
cgccaatataattactgtttgaaatgcattcactggccatgccttcaagctggaagtgat
agcaggccaatatatttacccatggaggtttgcaatatacttgaaggacaacgctattct
agaaagctaaatgagcgccaagtcacgagcatcctgaggatggcatgcgagcgacctact
caaaggcagagtagcattttagaggtagttagtaggaacaactacagtaatgattattgt
gccaaggaatttggcattaaggtgacaaatcaacttgccttggttgatgctcgtgtgctg
ccatctccaaggcttaaataccatgactctgggcgagaaaaggtgtgtaatccattgatt
ggtcaatggaacatgaacaacaagatattgatcaatggaggatccattaagtactggact
tgtgtgacttttgcttctcgcttgcatctgaatgatgtcaggatgttttgcaacaacttg
gtcggtgtgtgcaataacatgggcatgcaaatgaatgggagaccatgtgttgacattggg
caagtacgcccagataacttagaagctgcactcagaaatatacatggacaatctgcaaaa
gtgatttctcaacaaggcgtgactgggcagcagcttgagttgctaatcatagtattacca
gatgcaaatgcaagtgttttctatggaagggcaaaacggctttgtgaaactgagctcggt
gcaataactcagtgttgtctacctaagaatgttcagaaaggtggccaacagtatctccaa
aacctggcccttaaaattaatgtcaaggttggtggccgcaacacagttctcgaagatgca
ctgcataggagaatgcatctgttaactgatttgcctacaataatctttggagctgatgtt
acccacccagctccaggggaggatgcatctccttctattgcagcggttgttgcatcaatg
gattggccggaagtttcaaagtacatatgcttggtgtcttctcaaggtcatagggaagag
atcataactgatcttttcacgcaagtgaaagatccacaaaagggacttattcatggtgga
atgatcagggaacttctcgtgtcgttctatagggcaaatgggaaacgcaaacctggaagg
ataattttttatcgagatggtgtcagtgaaggtcagtttagccaggtcttgctttatgaa
gtggatgcgattcgtaaggcgtgtgctagcttggaagagggctacctgcctccagttata
ttcattgtggtgcaaaagcggcatcacacacggctttttcctgaagatcatcatgcccgg
gatcagacagatcgaagtggaaatattctgccaggaactgttgttgacacaaagatatgc
catccaagtggattcgacttctacctatgtagtcatgctggtattcagggaacgagtcgc
ccaacacactaccatgttttgtttgacgagaataatttcacggctgatgcaatgcagacg
ttgacttacaatctgtgctacacgtatgcgcgatgcacaagatcggtttctatagttccc
ccagcttattacgcacacctggccgctttccatgcgcgccactacatggatgacggcctc
tctgaccagggatcatcgtcagcagcgagctctcggccgcacgatcatgccgtcctggtg
aagcagctgcccaaagtgaaggagaacgtcaggcagttcatgttctactgctga
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