KEGG   Panicum virgatum (switchgrass): 120688845
Entry
120688845         CDS       T07260                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:pvir04812]
    120688845
Cytoskeleton proteins [BR:pvir04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     120688845
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 Beta-prop_EML WD40_MABP1-WDR62_1st eIF2A NBCH_WD40 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_IP5PC_F Beta-prop_RIG_1st Beta-prop_NWD2_C Beta-prop_ACSF4 PROPPIN WDR54
Other DBs
NCBI-GeneID: 120688845
NCBI-ProteinID: XP_039827141
LinkDB
Position
9N:21739539..21754774
AA seq 266 aa
MVTSHADNMMKKFFAHSSNVNCAKFGRRTSRILITGGEDLKVNLWAVGKPSALLSLSGLT
SPVESVSFDSSEVTIGAGSASGTIKIWDVEEAKVVRTFTGHRSNCALLDFHPFGEFLASG
SSDTNMKIWDIRKKRCIHTYKGHTRRIDVLKFTPDGRWIVSGGADNSVKIWDLTAGKLLK
DFSLHEGPVNCLDFHPHEFLLATGSVDKTLKFWDLETFELIGSSGPENSREYFELVWFLI
INFFIPSYIWSLRVELDESACWKLST
NT seq 801 nt   +upstreamnt  +downstreamnt
atggtgaccagccatgctgataatatgatgaagaagttttttgcgcattcttccaatgtc
aattgtgccaagtttgggaggcggacatcaaggatcctcatcactggtggggaggatttg
aaggtcaatctttgggctgtagggaaacccagtgccctcctgagcctatcgggccttaca
agtccagttgagtcagtgagctttgactcttctgaagttaccataggtgctggttctgca
agtggaacaataaaaatatgggatgttgaggaggcgaaagttgtccgaacttttactggg
cacagatcaaattgtgcattgcttgatttccatccttttggagaattcttggcctctgga
tcttcagatacaaacatgaaaatatgggatattcgaaagaagagatgcattcacacatac
aaaggccatacccggcgaattgatgtacttaaatttactcctgatggtcgatggattgtt
tctggaggggctgataactcagtgaagatctgggatttgacggctgggaaactcttgaaa
gacttcagtcttcatgaaggtccagtcaactgcttagattttcacccccacgagttctta
ttggctacaggttcagtggataagactcttaaattttgggaccttgagacttttgagttg
attggttcttctggacctgagaacagccgagaatactttgagctggtatggtttctgatc
atcaatttcttcataccatcatatatctggagtttgcgtgtggaattggatgagagtgct
tgttggaaactaagcacatga

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