Panicum virgatum (switchgrass): 120689454
Help
Entry
120689454 CDS
T07260
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03420
Nucleotide excision repair
pvir03430
Mismatch repair
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120689454
03420 Nucleotide excision repair
120689454
03430 Mismatch repair
120689454
03440 Homologous recombination
120689454
03460 Fanconi anemia pathway
120689454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120689454
03032 DNA replication proteins [BR:
pvir03032
]
120689454
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120689454
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120689454
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120689454
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120689454
MMR (mismatch excision repair)
120689454
DSBR (double strand breaks repair)
HR (homologous recombination)
120689454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
120689454
NCBI-ProteinID:
XP_039827652
LinkDB
All DBs
Position
9N:complement(74209032..74212599)
Genome browser
AA seq
627 aa
AA seq
DB search
MDAATSVTPGAVSHILANPSPGDAAEIPELVVQVVDLKSIGTGSRFSFMASDGKDKIRAM
LPTQLAPEVHSGNLQNLGLIRILDYTCNALPPKNDKALIISKCEVASQALDAEIISEDKK
QEGPAIVLKPKDEGVVLSKPANAPLVVLKPKQEVKSASQIVNEQRGNACSAAPAARLAMT
RRVHPLISLNPYQGNWVIKVRVTNKGNLRTYKNARGEGCVFNVELTDEDGTQIQATMFNE
AAKKFYPMFELGKVYFVSKGSLRIANKQFKTVQNDYEMTLNENAVVEEAEGETIIPQVQF
NFVKIDQLGSYVNGRELIDIVGVVQSVSPTLSVRRKRDDETIPKRDIVVADDSGKTVSVS
LWNDLATTTGQELMDMVDSSPIVAIKSLRVSDFQGVSLSTVGKSTLLVNPDLPEAQNLKS
WYDSEGKGTSMAPIGADMGVARAGGLRSMYSDRVFLSHITSDPNMGQEKPVFFSLNAIIS
HIKPDQNMWYRACKTCNKKVTEAVEGGYWCEGCNKNDAECSLRYIMVIKVSDPTGEAWVS
VFNEHAERIIGCSADELDRIRREEGDDSYILKLKEATWVPHLFRVSVAQHEYMNERRQRT
TVRTEAPVDYAAESKYLLEEIAKLTAC
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgccacgtccgtcacgccgggcgccgtgtcccacatccttgcgaacccgtca
ccgggcgacgccgccgagatcccggagctcgtcgtccaggtcgtcgacctcaagtccatc
ggcacgggcagccggttcagtttcatggcgagcgacgggaaggacaagatcagggcgatg
ctccccacccaattagcgccggaggttcactccggcaacctgcagaacctcggcctaatc
cgcatcctcgactacacctgcaacgccctccctcccaaaaacgacaaggccttgattatc
agcaaatgcgaggttgcgtcccaagcgctcgacgccgagatcattagcgaagacaagaaa
caagaggggcctgcgattgtcctcaagcccaaggacgaaggcgtggttctgtccaagccc
gcaaatgctcccctggttgtgttgaagccgaagcaggaggtgaaatccgcgtcccagatc
gtgaacgagcagcgtggcaatgcgtgcagtgctgctccagcagcgcgcttggccatgaca
aggagggtccatcctttgatctccctgaacccttaccagggtaactgggtcatcaaggtg
cgggttacgaacaagggcaacctcagaacttacaagaatgcccgtggagaaggctgtgtc
ttcaatgtagagctcactgatgaggatggcacccagatccaggccaccatgttcaatgag
gctgcaaagaagttttatccaatgtttgagctggggaaggtctacttcgtctccaaggga
tcacttaggattgccaacaagcagttcaagacggtccagaatgactatgagatgacactg
aatgagaatgctgttgttgaggaagcagagggggaaactatcattccacaggtgcaattc
aattttgtcaagattgatcagctaggatcatatgtcaatggcagggaacttatagatatt
gttggtgttgttcagagtgtgtcacccacactgagtgttaggagaaagagagacgatgag
acaataccaaagcgtgacattgttgttgcagatgactcgggcaaaactgtgagtgtttca
ctctggaatgatcttgctactaccactggccaagagctcatggacatggttgacagttcg
cccatcgttgcgataaagagcctaagagtatctgacttccaaggtgtttctctttcaact
gtaggcaaaagtactcttctggttaatccagaccttcctgaggcacagaaccttaaatca
tggtatgactctgaaggcaagggcacttcaatggcaccgattggtgcagacatgggtgta
gcacgggctggtggcttgagatccatgtattccgatagagtttttctgtctcacatcacc
agtgatcctaatatgggccaggaaaagcctgttttcttcagtttgaatgccatcataagt
cacattaagccagatcagaacatgtggtaccgagcttgcaagacctgcaacaagaaggtg
actgaagctgttgaaggtgggtactggtgtgaaggatgcaacaagaatgatgctgagtgc
tcactgagatacatcatggtcatcaaggtctctgatcccactggcgaggcatgggtttct
gtcttcaacgagcatgcagagaggatcattggctgcagcgctgatgagcttgatcggatc
agaagagaggagggtgacgacagctacattctcaaactcaaggaagccacctgggttccc
catctgttccgtgtcagcgtcgcgcagcatgagtacatgaacgagaggaggcagaggacc
accgtgaggactgaggcgccggtcgactacgccgctgaatccaaatacctgctcgaggag
atcgccaagcttactgcttgctag
DBGET
integrated database retrieval system
