Panicum virgatum (switchgrass): 120689501
Help
Entry
120689501 CDS
T07260
Name
(RefSeq) tRNA wybutosine-synthesizing protein 2/3/4-like isoform X1
KO
K15450
tRNA wybutosine-synthesizing protein 3 [EC:
2.1.1.282
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120689501
Enzymes [BR:
pvir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.282 tRNAPhe 7-[(3-amino-3-carboxypropyl)-4-demethylwyosine37-N4]-methyltransferase
120689501
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
120689501
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
TYW3
Beta-prop_FBX42
Beta-prop_ATRN-LZTR1
TRM5-TYW2_MTfase
Kelch_1
Beta-prop_TYW4
Kelch_HCF
Kelch_2
Kelch_FKB95
TYW2_N_2
NANM
Beta-prop_Calicin
DUF6242_C
MTS
DNA_methylase
Cons_hypoth95
Trm5_N
Motif
Other DBs
NCBI-GeneID:
120689501
NCBI-ProteinID:
XP_039827718
LinkDB
All DBs
Position
2K:58139962..58149466
Genome browser
AA seq
1086 aa
AA seq
DB search
MDFARRKAAALVALSSPAPDKSPKGGVDAPVAPLLEVLNSHPDLFTTSSCSGRVSVLAQP
REGQGQAAAKPKKKARGGGWVYVSHDPADPDAVVEQLFGRSGSGAAGDELVFRFEPMIVA
VECRDAAAAAALVATAISAGFRESGITSLQKRAMVAIRCSIRMEVPLGQTGEVVVSPEYV
RYLVRIANSKMEANKKRMDGFLDLLQTKGLSGSSAGSNNCNGSDSQPVAHRSSMSCEVKI
PLRKGAKNSNEYLVTKKRNGGNNCHSDDRGDSEIGEGSLEAQYFENQNSSWSKGLERGFG
NAKRFTLEEKLPENKNYLSTAVLKISGEPIEKLFLWGQSSCVFTVGGEQRVLTFGGFGGP
GRHSRRNCSLLLDHKSGSLTEMICKESPSPRMGHTVTYVGNSIYVIGGRGGPSEILDDVW
VIQSTENTWLRLECSGNIFRPRHRHAAAAAASKIYVFGGLSNEGIYSCMNVFDTKSKQWS
MLAAAGEWPCARHSHSLVSYGSKLFMFGGHDGQQALNDFYSFDTTTLKWNKESTNGGTPS
PRFSHCMFIYKNYLGILGGCPITGNNQEVTLLNLKHGVWFSVSIPMLSQCLCVRSSSVLI
EDDLVIVGGGASCYAFGTRFNEPIIIDLHSVDSMFKLDNMYGMLIQSCDATSTVDLSRDE
QSGIIGHAMKSQNDARSGGFTDSDPLILQLEKKYAKLAKDILKKFGWLDLARKVRVSHDN
NHVLFPVNEAFHVLNTDKRIKMEHDDSCTLGEPLAFSENKLAGDNLSLQNALKILSSCNG
SFLKDELAISRKPSKSPQTIMKEFVSSLLESKGMSYQLLEQLPARWETLGDIIILPKTCF
KDPLWESVGEELWPLIAKSLGAQRLARQGKIMPNGTRDSTLELLLGDNGWVTHHENGIRY
SLDATKCMFSSGNRSEKLRMGQLNCRDEVVVDLFAGIGYFVLPFLVKANAKFVYACEWNP
HALEALRRNVRDNHVEDRCIILKGDNCVTAPKGVADRVCLGLLPSSECSWATAVRALRVE
GGILHIHGNVNDSDETRWLDSVVESISDIAKAHGLPWNISLDHIERVKWYGPHIRHLVVD
VRCRPI
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgctcgccggaaggcggcggcgctggtcgcgctctcatcgccggcgccagac
aagtccccgaagggaggagtcgacgctcccgtcgccccgctcctcgaagtgctcaactcc
cacccggaccttttcactacctcctcctgctccggccgcgtctccgtcctcgcgcagccg
cgggagggccaaggccaggccgccgccaagccgaagaagaaggcgcggggcggcgggtgg
gtgtacgtgtctcacgatcccgccgacccggacgccgtggtggagcagctattcggccgg
agcggctcgggagcggcgggggacgagctggtgttcaggttcgagccgatgatcgtggcg
gtggagtgcagggacgccgccgcagctgccgcactcgttgccactgcgataagtgctggg
ttccgggaatcaggtatcacaagcttgcagaaacgagcaatggtggcaataagatgctcg
attcgtatggaagtgccactggggcagactggtgaagttgttgtttctccagagtatgtc
cgttaccttgttagaattgccaactctaaaatggaggcaaataaaaagcgaatggatgga
tttctagatcttttgcagactaagggtttgtcaggttcatcagcggggtcaaacaattgt
aatggaagtgacagtcagcctgttgctcacaggtcttccatgagctgtgaagttaagata
ccattgcgtaaaggtgccaagaacagtaatgaatacttagttacaaaaaagagaaatggt
ggtaacaactgtcattctgatgatagaggtgatagtgaaattggggagggttcactagaa
gcacagtattttgaaaatcaaaactcttcatggagcaagggtctcgagcgtggttttggt
aatgctaaacgatttacactggaggagaagttgccagaaaacaaaaattatttatctact
gctgtattgaagattagtggtgagccaattgagaagctcttcttatggggccaatcatcg
tgtgtgtttactgttggaggagagcaacgggtcctaactttcggcggatttggaggacca
ggaaggcattcaaggagaaattgttcccttctgcttgatcacaaatctggttcgttgaca
gaaatgatctgtaaagagtctccttcaccacggatgggccatacagttacttatgttggt
aatagcatttatgtcattggaggtaggggtggtccttcagaaattcttgatgatgtctgg
gttatacaaagcaccgagaatacctggttaagactggagtgcagtggaaatatcttccgt
ccaaggcaccggcatgctgcagctgcagcagcttcaaaaatatatgtctttggcggactt
agtaatgaaggcatatattcttgcatgaatgtatttgacacgaaaagtaagcaatggagc
atgcttgctgctgctggcgaatggccatgtgctcggcattcacattctctggtgtcttat
ggttcaaagctttttatgtttggaggtcatgatggtcagcaggcattgaatgacttctac
agttttgatacaacaacactcaagtggaacaaggaaagcactaatgggggaactccgtca
cctaggttttcacattgcatgttcatctataaaaattatcttgggatacttggtggttgc
cctattactggaaacaatcaagaagtcacattgctgaacttaaagcatggagtctggttt
tctgtttccatccccatgttgagccagtgcctctgtgtccgtagctcctcagttctcatt
gaagatgatcttgttattgtaggtggcggtgcatcttgctatgcatttgggaccagattt
aatgaaccaataataattgatctgcattcagtggattctatgtttaaacttgacaacatg
tatggcatgcttatacaaagctgtgacgcaacgtctactgttgacttatcaagagatgaa
caaagtggcatcattggtcatgctatgaaatcacaaaatgatgcccgttctggtggtttt
actgattcagaccctctgattcttcagctggaaaagaagtacgccaaattagcaaaggac
attctgaaaaagtttggatggttggatcttgctagaaaagttcgagtgagccatgataac
aaccatgttctctttcctgttaatgaagccttccatgtcctaaacactgataagcgtatc
aagatggaacatgatgattcgtgtacccttggagaaccattggcatttagtgaaaataag
cttgcaggagacaacctatctcttcaaaacgcattaaaaattctgtcatcttgcaatggt
tcctttttgaaagatgaactagcaatcagccgaaagccttccaagtctcctcaaaccatc
atgaaagaatttgtatcttctctactggaaagtaagggaatgtcctatcagttgttggag
cagctcccagcaaggtgggagacacttggtgatatcatcatactcccgaagacatgtttt
aaggatccattgtgggaatcagttggcgaggaactttggccactaattgccaagtcactc
ggtgcacaacgtcttgcacgtcaaggtaaaatcatgccaaatggtacaagagatagtaca
ctggaacttcttctgggtgataatggatgggttacccatcatgaaaatggcatccgctat
tcgcttgatgcaacaaaatgtatgttttcttctggcaatcgttcagagaagcttcgcatg
ggacagctaaactgtagagatgaggtggttgtggatttgtttgccggaatcggatacttt
gttcttccctttcttgtgaaggctaatgctaagttcgtttatgcatgtgaatggaatcca
catgctttagaagctcttcgacgcaatgttcgtgacaaccatgtagaagaccgatgtatt
atacttaaaggagataactgtgttactgcacccaaaggtgttgctgatcgagtttgtctc
ggattgttaccctcaagtgaatgcagctgggccactgctgttagagctttaagggttgaa
ggaggcatattgcatatacacggcaatgtcaatgactcagatgagacacggtggctggac
agtgttgttgaatccatcagtgatattgctaaagctcatggactaccttggaacatctct
ttggaccatatcgaacgtgtgaaatggtatgggccgcatattcgacaccttgtggttgat
gttagatgccggccaatctaa
DBGET
integrated database retrieval system
