Panicum virgatum (switchgrass): 120689512
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Entry
120689512 CDS
T07260
Name
(RefSeq) putative aconitate hydratase, cytoplasmic
KO
K01681
aconitate hydratase [EC:
4.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00020
Citrate cycle (TCA cycle)
pvir00630
Glyoxylate and dicarboxylate metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01200
Carbon metabolism
pvir01210
2-Oxocarboxylic acid metabolism
pvir01230
Biosynthesis of amino acids
Module
pvir_M00009
Citrate cycle (TCA cycle, Krebs cycle)
pvir_M00010
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
pvir_M00012
Glyoxylate cycle
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
120689512
00630 Glyoxylate and dicarboxylate metabolism
120689512
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.3 aconitate hydratase
120689512
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Gene cluster
GFIT
Motif
Pfam:
Aconitase
Aconitase_C
Motif
Other DBs
NCBI-GeneID:
120689512
NCBI-ProteinID:
XP_039827734
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Position
9N:79907550..79914392
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AA seq
989 aa
AA seq
DB search
MPPLTSALLSRSTTGSSTRVSAAAAAAISRPAADAAPSSSPPPSRPIPRPRPSPASPFAS
GLAGRLFSGHRAAARSASSATAVFERRFASAATRNTYDEILTGLGRPGGGEEFGKYYSLP
ALSDPRIDRLPYSIRILLESAIRNCDDFQVTGKDVEKILDWENSAPKQVEIPFKPARVLL
QDFTGVPAVVDLACMRDAMSKLGSDPNKINPLVPVDLVIDHSVQVDVARSQNAVQANMEL
EFHRNKERFGFLKWGSSAFRNMLVVPPGSGIVHQVNLEYLARVVFNNGGILYPDSVVGTD
SHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVT
QMLRKHGVVGKFVEFYGQGMSELSLADRATIANMSPEYGATMGFFPVDAKTLDYLKLTGR
SDNTVAMVESYLRANKMFVDHNQVEAERVYSSYLELNLEEVEPCLSGPKRPHDRVTLKNM
KSDWLSCLDNDVGFKGFAVPKESQGKVAEFSFHGTPAKIKHGDVVIAAITSCTNTSNPNV
MLGAALVAKKACELGLEVKPWIKTSLAPGSGVVKKYLDKSGLQKYLDQLGFHIVGYGCTT
CIGNSGELDESVSAAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT
VNIDFEKEPIGISKDGKEVYFRDVWPSTEEIAEVVKSSVLPDMFKSTYEAITKGNPMWNE
LSVSASTLYPWDPSSTYIHEPPYFKDMTMTPPGPRPVKDAYCLLNFGDSITTDHISPAGS
INPESPAAKYLKERGVERKDFNSYGSRRGNDEIMARGTFANIRLVNKFLNGEVGPKTIHV
PSGEKLAVFDAAMKYKNEGHDTIILAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIH
RSNLAGMGIIPLCFKAGEDADTLGLTGHERYTIHLPTNVSDIKPGQDVTVTTDTGKSFTC
TLRFDTEVELAYYDHGGILPYVTRKIAEQ
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccctcacgagcgccctgctctcccgctccaccaccggctcctccacccgcgtc
tccgccgcggcggccgcggcgatctccaggcccgccgcggacgccgccccgtcgtcctcg
cctcccccttcacgcccgatcccgaggccgcgccccagcccggcgtcgcccttcgcgtcc
ggcctcgcgggccgcctcttcagcggccaccgcgccgccgcccgctccgcatcgtctgcg
accgcagtcttcgagcgccggttcgcctccgctgcgaccaggaacacttacgatgaaatc
ctgacgggcctcggtaggccaggaggcggagaggagttcgggaagtactacagcctgccc
gctctctctgatccgaggattgatcggctcccctactctataaggattcttcttgagtcg
gcaatcagaaactgcgatgacttccaggtcactggtaaggatgttgagaagatcttggat
tgggagaacagcgcaccaaagcaagttgaaatcccattcaagccagcccgtgttcttctc
caggattttactggtgtcccagcagttgttgatcttgcatgcatgagggatgctatgagc
aaacttggcagcgacccaaacaaaattaatcctctggttcctgtagatcttgttattgat
cattcagtacaagtcgatgttgcacgatcacaaaatgctgttcaggcaaatatggagctc
gagttccatcgtaacaaggagcggtttggtttcttgaaatgggggtcctctgcattccgt
aacatgcttgttgttccacctgggtctggcattgtccaccaggtgaatcttgagtacctg
gccagggttgtgtttaacaatggtgggatcctttaccctgacagcgtagtaggaactgat
tctcacacaactatgattgatggtctcggtgttgctggatggggagttggtggcatagag
gcggaagctgcaatgcttggccagccaatgagcatggtcttgccaggtgttgtcggtttc
aagttatcaggcaagctgaggaatggagttacagccacagatttggttctaacagtaact
caaatgcttcgtaaacatggcgttgttggaaaatttgtcgagttctatggccaaggtatg
agtgaattgtcacttgctgatcgggccaccattgcaaacatgtcaccagagtatggtgca
actatgggtttcttcccagttgatgcaaagacactggactatttaaaacttactggcaga
agtgataatactgtggccatggtagagtcctatctgcgtgccaataagatgttcgtcgac
cacaaccaggttgaagctgaaagagtgtattcttcttatctagaacttaaccttgaggag
gttgaaccatgtctatcaggaccaaaacggcctcatgatcgagtgacattgaagaacatg
aagtcggattggctttcttgcttggacaacgatgtagggtttaagggttttgctgtcccc
aaagaatcacagggcaaagttgcagagttttcattccatgggactcctgcaaagataaag
catggcgatgttgtaattgcagctataactagttgcaccaacacgtcaaatcctaatgta
atgctgggagctgctttggttgcgaaaaaggcttgtgaattaggcctagaggtaaagccg
tggatcaagacaagccttgcacctggttctggtgttgtgaagaagtacttggataagagt
ggtctgcagaaatatcttgaccagcttggcttccatattgttggctatggttgcacaacc
tgcatcggaaattctggagaacttgatgaatctgtgtcagctgcaatttctgagaatgat
attgttgctgctgctgtcttgtctggtaacaggaattttgaaggacgtgtacatccattg
accagagcaaattaccttgcttctcctccactagttgtggcttatgccttggctggcacg
gttaatattgattttgagaaagaacctattggcatctcgaaagatgggaaagaggtttac
ttcagggacgtttggccttccacagaagagatagccgaggttgtcaagagcagtgtgctc
cctgacatgttcaagagcacatatgaggcaatcacaaaaggaaatcctatgtggaatgag
ctgtcagtctcagcaagcactctctacccatgggatccctcatctacttacatccatgag
cctccttatttcaaggatatgacaatgacccctcctggcccacgacctgtgaaggatgca
tattgccttctgaactttggtgacagtatcacaactgaccacatatcccctgctggaagc
attaacccagagagcccagctgcaaaatatctgaaggagcgtggtgttgaaaggaaggac
ttcaactcatatggtagccgacgaggaaacgatgagatcatggctaggggtacttttgcc
aacatccgccttgtgaacaagttcttgaatggtgaggttggaccaaaaacaatccatgtt
ccgtctggggagaagcttgctgtttttgatgctgctatgaaatacaagaatgaagggcat
gatactataattctggctggtgctgagtatggtagtggaagctctcgggattgggctgca
aagggcccaatgcttcagggagtcaaggctgtgatagcaaagagctttgagaggattcac
cgtagcaatcttgctggcatgggaattatccctctttgcttcaaggcaggggaggatgca
gacacccttggcttaactggccatgagcgctacacgatccaccttccaaccaatgtgagt
gacataaagcctggacaagatgttaccgtgacaactgatactgggaagtcattcacttgc
acgctcagattcgacaccgaggtggaacttgcttactacgaccatggaggcattctaccg
tacgtcaccagaaagattgcagagcaatag
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