Panicum virgatum (switchgrass): 120689521 Help Entry 120689521         CDS       T07260                                  Name (RefSeq) DNA ligase 1-like isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism pvir  Panicum virgatum (switchgrass) Pathway pvir03030   DNA replication pvir03410   Base excision repair pvir03420   Nucleotide excision repair pvir03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pvir00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     120689521    03410 Base excision repair     120689521    03420 Nucleotide excision repair     120689521    03430 Mismatch repair     120689521  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pvir03032]     120689521    03400 DNA repair and recombination proteins [BR:pvir03400]     120689521 Enzymes [BR:pvir01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      120689521     6.5.1.6  DNA ligase (ATP or NAD+)      120689521     6.5.1.7  DNA ligase (ATP, ADP or GTP)      120689521 DNA replication proteins [BR:pvir03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     120689521  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      120689521 DNA repair and recombination proteins [BR:pvir03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      120689521    NER (nucleotide excision repair)     Other NER factors      120689521    MMR (mismatch excision repair)     Other MMR factors      120689521 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HVO_A0114 V1R_C Ndc1_Nup Motif Other DBs NCBI-GeneID:  120689521 NCBI-ProteinID:  XP_039827742 LinkDB All DBs Position 9N:22147271..22155382 Genome browser AA seq 883 aa AA seqDB search MFLRATSSTTTSPLLLRCRPLPSPKTLALAPPPPLLPFFIRPRLFAAAPSSSASAASPPR CATAAAAAAKSAEKKPPAARARRAGAVPAPAAAAAAGMSAPGGGAGGKRTVADVLMGNAR AAASKAKKAAPSPRKPRAQPDGAETEPEAAAVVGKPPSLARSKRASSPAKSPQSLADGAA GEKKRSTSPAKSKGPAAAAQLDGAKEDSPSPKRSKTLAAKSDTVLQTDGKAKTKDSPKSE EKNTTLELKKKGSEFDPMAAAYWKPGEPVPFLFLAQALDLISNESGRIVITEILSNVFRT VMATTPDDLLATVYLSANRIAAPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLKELGD LGLVAKASRSSQKMMFKPKPLTISRVLSTFRTIAKESGKDSQDKKRNHIKGLLVAATDCE PQYITRLLQSKMRIGLAEKTVQMALGQAAVYSDKKSSPPKVQSPFEEAAKIIKQVYSVLP IYDKIVPALLEVGVWKLPETCKFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDG ERAQIHCMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKQK ILPFQILSTRARKGVTINDIKVSVCTFGFDILYINGQPLLQEQLKIRREHLYNSFEEVPG VFQLATAITSNDLEEIQKFLDTAVNSSCEGLIIKTLDKDATYEPAKRSNNWLKLKKDYMD SIGDSLDLVPIAAFYGRGKRTGVFGSFLLACYDEHNEEYQTICNIGTGFSEQQLEERSSS LRSKVIEKPKAYYRFADTMDPDVWFEPSEVWEVKAADLSISPVHRAANGIVDPNKGISLR FPRLLRLRDDKSPEQATTSEQVADMYRAQKINHGYNQEDEDDD NT seq 2652 nt NT seq  +upstreamnt  +downstreamnt atgttcctccgagccacctcctccaccaccacctccccgctcctcctccgatgccgcccg ctcccctcgcctaaaaccctagccctcgctccgcctccccctctcctcccctttttcatc cgcccccgtctcttcgccgccgccccctcctcctccgcgtccgcggcctctcctccccgc tgcgcgactgcggccgccgccgcggccaaatccgcggagaagaagccgccggccgcgagg gcgaggcgggccggcgcggtgcctgcaccagctgcggcagcggcggcgggaatgtcggcc cccgggggcggcgccggggggaagcgcacggtggcggacgtgctcatggggaacgcgcgg gccgccgccagcaaggcgaagaaggcggcgccgtccccgaggaagccccgggcgcagccc gacggcgcggagaccgagccggaggccgcagcggtggttggaaagccgccctcgctggcg aggtccaagcgggcgtcgtcccccgcgaagtctccccaatcgctggctgatggggcggct ggcgagaagaagaggtcgacgtcgccggcgaagtccaagggtccagccgcggccgcgcaa ttggatggagcgaaggaggattccccgtcgccgaagaggtccaaaaccctagcggccaaa tcggacactgtcttgcagacagatgggaaggccaaaaccaaagattccccaaagtccgaa gagaagaataccaccctagagctgaagaagaaaggcagtgagtttgacccgatggctgct gcctattggaagcccggtgagcccgtgccattcctgtttctggctcaggcgcttgatctc atctccaacgagagtggccggattgtcattactgaaatcctatcaaatgtgttccggaca gtgatggcaacaacaccggatgacctccttgcaacagtatacctctcagctaatcggatt gcggcacctcatgaggggattgagcttggaattggggatgcatcagtcatccgtgcactt gcagaagcatatggacgcaaggaggagcatgttaagaaggatctcaaggaattgggtgat ttgggtcttgtggcgaaagcaagcaggtcatcacagaagatgatgtttaagccaaaacca ctgacaatatctcgggtgcttagcacttttcggacaattgcaaaggagtcaggcaaagac agtcaagataaaaaaagaaaccatatcaagggacttcttgttgctgccactgactgtgaa cctcaatacatcacacgtcttcttcagtcaaagatgaggatcgggctggcagagaaaact gtccaaatggctcttgggcaagctgctgtatattctgacaaaaaatcttcgccaccaaaa gttcaatcgccttttgaagaggctgcaaaaataattaaacaagtatattcagttcttcca atctacgataaaattgtcccagcattacttgaagttggagtttggaagcttccggagaca tgcaaattttccataggtgtccctgttggccctatgttagcaaaagcaacgaaatctgtc tcggagatcattgacaagtttcagggtcttgagtatacttgtgagtacaagtatgatggt gaaagggctcagatacattgcatggaggatggttcagtagagatttatagtcggaatgct gaaagaaacaccggaaagtatccagatgttgttgatgcagtttctagattccggaagcct acagtcaaatcatttgtcttggactgtgaaattgttgcctatgatcgtgaaaaacagaaa attttgcctttccagatacttagcacaagggcccgcaagggtgttaccataaatgacatc aaagtttcagtctgtacttttggctttgatattctttacataaatggacaaccccttctc caggaacaactcaaaattcgtcgagagcatctttacaactcttttgaggaagtaccaggt gtttttcaattggcaactgcaattacatcaaatgacctggaggagatacagaaatttctt gacacagctgtcaactccagttgtgaagggttgattatcaagacattggataaagacgct acatatgagccagcaaagcgatcaaataattggttgaaactgaagaaggactacatggat agcattggagactctttggacttagtaccgattgctgccttttatgggagaggaaaacga acaggtgtctttggatcattcctcctggcatgctatgatgagcataacgaagaatatcaa acaatatgcaacataggtactggattttctgagcaacagcttgaagaacgttcttcaagc cttcgaagtaaagtgattgaaaaaccaaaggcatactacagatttgctgacacaatggac cctgatgtgtggtttgaaccgtcagaggtgtgggaggtgaaagctgcagatctgagcata agtcctgtgcatcgtgctgctaatggtatagtcgatccaaataagggtatctccctgaga tttcctcgtttgttgcgattacgggatgataaaagcccagaacaggcgaccacttctgag caagttgctgacatgtaccgggctcaaaaaatcaaccacggttataaccaggaggatgag gacgatgactga

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