Panicum virgatum (switchgrass): 120689598
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Entry
120689598 CDS
T07260
Name
(RefSeq) serine/arginine-rich-splicing factor SR34-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120689598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120689598
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120689598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
120689598
NCBI-ProteinID:
XP_039827845
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All DBs
Position
9N:complement(64463285..64468049)
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AA seq
283 aa
AA seq
DB search
MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAED
AIAGRDGYNFDGHRLRVEPAHGGRSNASSYDRSGGFGGGARRGVSRRSEYRVLVTGLPSS
ASWQDLKDHMRKAGDVCFSEVYREGGGTIGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAY
IRVKEYDGKRGRSYSRSRSPSRSYSRSRSPSKSPRARRSASRSRSRSVSSRSRSASKGRS
PSRSPARSKSPNASPANGEAASPKKQSPSRSPSGSRSPDAKPE
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggcgctggagccgcacgatctacgtcgggaacctcccgggcgacatccgggag
agggaggtggaggatctcttctacaagtatgggagaattgttgacattgacttgaaggtc
cccccgaggccacctggttatgcttttgttgagtttgaagatcctcgtgatgctgaagat
gcaattgctgggcgtgatggatacaattttgatggacaccgcctaagagtggagcccgct
catggtggtagaagtaatgcttcctcatatgaccgttcaggtggctttggtggtggagcc
cgacgtggtgtgtcaaggcgctcagagtatcgtgttcttgtcactggactgccttcttct
gcatcatggcaggatttgaaggatcatatgcggaaggctggtgatgtttgtttctctgaa
gtgtaccgtgaaggcggtggcaccattggaattgtggactacacaaactatgatgacatg
aaatatgctataaagaagctggatgatactgaattcaggaatgcctttgggcgagcttat
ataagggtgaaggaatatgatggcaagcgtggacgctcctactcacgtagccgaagccca
agtcgtagctacagcagaagcaggagcccgagcaaatcgccccgggctcgccgctcagca
tctagatcccgttcaaggtctgtttcttcccgttcaaggtctgcatcaaaagggcgttct
ccgtcaagatcaccagcaagatctaaatctcctaatgcttctccagcaaatggtgaagca
gcaagccccaagaagcagagcccaagcagaagcccatctggctcacgctctcctgatgcc
aaacctgaataa
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