Panicum virgatum (switchgrass): 120689607
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Entry
120689607 CDS
T07260
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120689607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120689607
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120689607
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120689607
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF5646
Aip3p_Bud6_N
DUF4407
Motif
Other DBs
NCBI-GeneID:
120689607
NCBI-ProteinID:
XP_039827861
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Position
9N:14791327..14800341
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AA seq
863 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVSDLESQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVEDLYSTLPKEKVEA
LEDMVSLAPSSLVKGVASVSTSAVLSTKSSVATSSTQPTVSTSSQSTSQDQTEETVSQES
NSESTPQTPPSKGGNLGPSVPVVPIAVSTGSVAASVPAETINSPVRPTVPTTAAAILSSA
TPRSAPESMPAVTSIPANLSSTLKDDDGMSFPPRRPSPAITEIGIGRGIARGLTSQTLGT
APISNVPVPGNGSVSALPAINDLSKRNLLNTDERINSGGLSQQLVSPLGNKVQPQQVPRT
NDAISSDSASTNENPIIGGRVFSPPVVSGAQWRPQTAGAFQNQSETSQFRGRPEISADQR
EKYLQRYHQVQQQQGNLLNVSNIAGINQKQFPTQQPNPLLQQFNSQSSSISSQVNLGLGA
QISDGGHVKSEEQQQSLAEDVGVESAATTGANKQTSEDDTKIPYPNPSAPAAENSQLPRE
TDLSPGQPLQPGMSSSGVGVIGRRSILDLGAIGDNLTGTSASSGHDQLYNLQMLEAAFHK
LPQPKDSERAKNYVPRHPAVTPASYPQIQAPIVSNPTFWERIGSDTLATDMLFFAFYYQQ
NTYQQYLAAKELKKQSWRFHRRYNTWFQRHVEPQVTTDEYERGSYVYFDFHVTDDGSGWC
QRIKNDFTFEYNYLEDELSVQTN
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagtcggaagctgcagggcgagatcgaccgtgtcctcaagaaggtccaggag
ggtgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgcgaaccag
aaggagaagttcgaggcggacctcaagaaggagatcaagaagttgcagcggtaccgggac
cagatcaagacgtggatccaatccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctgatggatgcccggaagcagattgaacgagagatggaacggtttaaagtt
tgtgaaaaggaaacaaaaaccaaggccttctcaaaagaagggttaggtcagcaaccaaaa
actgatcccaaagagaaggccaaagctgaaacgagggactggcttaataatgtggttagt
gatttggaaagccagattgataactttgaagcagaggttgaagggctttcaattaaaaaa
ggaaaacaaagaccgcctcgacttgtacatttagagaagtctattacgcgacacaaagct
catataaagaaattggagtcaatcttgagacttttggataacgatgagttgagtcctgag
caagtcaatgatgttaaagattttcttgaagactatgtggaacgtaatcaggaagacttt
gatgaattcagtgatgttgaggatctctatagcacattgcctaaggagaaggttgaagca
cttgaagacatggtttcacttgctccttccagtcttgtgaagggtgttgcttctgtttcg
actagtgcagttttgagcacgaagagttcagttgcaacttcatcgactcagcctactgta
tcaacttcttcacaaagtacatcacaagatcaaacagaggagacggtttcacaagaaagt
aattctgaatctacaccacaaacaccaccttcaaaaggtggaaatcttggaccttcagtg
ccagttgtgcccattgctgtcagtactggtagtgtggctgcttctgtccctgcagaaaca
attaattcccctgtgcggcctactgttcctaccacagcggctgcaatactttcttcagct
actccacgaagtgctccagagagtatgcctgctgtaacctcaattcctgctaacttatct
agcaccttgaaggatgatgacggcatgagttttcctccacgaagaccatctcctgccatt
actgaaattggaattggcaggggcatagctcgtggactaactagtcagacgttaggtaca
gctcccataagtaatgttccagttccagggaatggatcggttagtgcacttcctgcaata
aatgacttgtccaaaagaaatctattgaacactgatgagaggattaacagtggtggtctt
tctcaacagttggtttcgcctcttggtaataaagttcaaccacagcaagttcctaggact
aatgatgcaattagctctgactctgctagtacaaatgaaaaccctattattggaggaaga
gtgttttctcctccagttgtttctggtgctcaatggaggccccaaactgctggtgcattt
caaaatcaaagtgaaactagtcaatttcgtggaaggcctgagatttctgctgaccaaagg
gagaaatacctacaaagatatcatcaagtacagcagcagcaaggcaaccttcttaatgtt
tctaatatagctggcataaatcagaagcaatttcctacacagcagccaaatcctcttctg
caacagtttaactcacagagttcctctatatcctcccaagtgaatctcgggcttggagct
caaatatcagatggtgggcatgtaaaaagtgaagaacaacaacaaagtttggctgaagat
gttggtgttgaatctgctgcaacaactggagcaaataaacaaacaagcgaagatgacaca
aagattccttatccgaatccttcagcacctgcagctgaaaacagccagctgcctagggaa
actgatctatcacctgggcagcctttgcaacctggaatgtcatcatctggtgttggtgtt
attgggcgaagaagtatactggatcttggtgcaatcggggataacctcactggaacctct
gcaagttctggtcacgatcaactttataatttgcaaatgcttgaagctgcattccataag
cttccacaacccaaggactcggagcgtgctaaaaattatgttccgcggcatcctgcagtc
acccctgctagctacccccaaattcaggcaccgattgtatcaaatcctaccttttgggaa
agaattggtagtgacactttggctacggatatgctgttctttgcgttctactatcaacag
aacacataccaacaatacttggctgctaaagaattgaagaagcaatcatggagatttcat
aggaggtataacacttggttccagcggcatgtggagccacaagttacgactgatgagtat
gagcgaggctcctatgtgtactttgattttcatgtcaccgatgatggctcaggatggtgc
caaagaatcaagaatgacttcacatttgagtacaactaccttgaggatgagctgtcagta
cagacaaactag
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