Panicum virgatum (switchgrass): 120689724
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Entry
120689724 CDS
T07260
Name
(RefSeq) SEC1 family transport protein SLY1-like
KO
K19998
sec1 family domain-containing protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120689724
Membrane trafficking [BR:
pvir04131
]
SNARE
SNARE associated proteins
Syntaxin-binding proteins
120689724
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
120689724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec1
Motif
Other DBs
NCBI-GeneID:
120689724
NCBI-ProteinID:
XP_039828047
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All DBs
Position
9N:complement(34893771..34896248)
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AA seq
623 aa
AA seq
DB search
MALSLRRKQLDVIVRMLHLNQQHLPNGGEGQGEEEAYKLLVMDPPCVSLLSPVLKVGDLR
RHGVTLTLGIDRPRQAVADAPAVYLVRPTPSNVDRIAADAAAGLYASFHVNFSTSVPRPL
LERLAAACAAAPPACAGRVARVADQYIDFVCLEEGLFTLAQPRAYIALNDPAAADADITS
LIDAVALGLFCVFATLGVVPVIRCARGGPAEMVAAALDARLRDHLLAKPNLFTEAASAAV
ASFQRPVLCLFDRNFELSVGVQHDWSYRPLVHDVLGLKLNKLKLPAEKYELDDSDKFWVT
NSWSPFPKVAEEIEAQLAKYKQDVDEVNQRTGGGSGVEFDGTDLFGNTRHLMNAVNSLPE
LTERKKMIDKHTNIATSLLGHIKERSLDGYCDCENDMLVNGTVDRNTLLSLLRGKGTKED
KLRLAVTYLLSFETPPSSELEQVEAALRESEVDMSAFQYVKRIKALNTQFAAASGTATKS
NIVDWAEKLYGQSLSAVTAGVKNLLSDGRQLALTRTVDALIEGKPNPEVDDYLLFDPRAP
RSGTGGQFKGPFREAIVFMIGGGNYIEYRSLMELEQRTQPSKHVIYGATEILSGAEFIHQ
LAELGQKAGLGGGSSNIPPGAAQ
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcagcctccgccgcaagcagctcgatgtgatcgtgcggatgctgcatctgaac
cagcagcacttgccgaacggcggcgaggggcagggggaggaagaggcgtacaagctcctg
gtgatggacccgccctgcgtctccctcctctcgccggtgctcaaggtcggcgacctccgc
cgccacggcgtcaccctcactctcggcatcgaccggccgcgtcaggcggtcgccgacgcg
ccggccgtctacctcgtccgccccacgccgtccaacgtcgaccgcatcgccgccgacgcc
gccgcaggcctctacgcgtcgttccacgtcaatttctccacctccgttccgcggcccttg
ctcgagcgcctcgccgccgcatgcgccgccgcgccgcccgcgtgcgcgggccgcgtggcc
cgcgtcgccgaccagtacatcgatttcgtctgtctcgaggaggggctcttcacgctggcc
cagccccgtgcctacatcgcactcaacgaccctgctgccgccgacgccgacatcacttcc
ctcatcgacgccgtcgctctggggctcttctgcgtcttcgccactctcggtgtggtgcct
gtcatcaggtgcgctcgtgggggccctgcagagatggtggccgctgcgcttgatgcccga
ctccgcgaccacctactcgccaagcccaacctcttcacggaggctgcatccgcagctgtt
gcctcgttccagcgccctgtgctgtgcctcttcgacaggaatttcgagctatctgttgga
gtgcagcacgactggagctaccggccgttggtccatgatgtgcttggtttgaagcttaac
aagctgaaattacctgcagagaagtatgaattggatgactccgataaattctgggtcaca
aatagctggtcaccgttccccaaagtcgctgaggaaattgaggcgcagcttgccaagtac
aagcaggacgtggatgaggtgaaccagcgcactggtggtggcagtggagttgagttcgat
ggaactgatctgtttggcaacacaaggcatctcatgaatgcagtgaattcactccctgag
ctgacagaacggaagaagatgattgataaacacacaaacattgcaacatcattgcttggg
catattaaggagaggtctctggatggatactgtgactgtgagaatgatatgcttgtgaat
ggcactgtggaccgtaacacactgctgagcctccttagaggcaagggcactaaggaagat
aagcttcggctagctgtgacctacctgctgtcctttgagacgccaccatcatcggaattg
gagcaggttgaggctgcacttcgggaatcggaagtagacatgtcagcatttcagtatgtg
aagaggataaaggcattgaacactcaatttgctgctgcatcaggcacagcaaccaagagc
aacattgtcgattgggctgagaagctttatgggcagtcccttagtgctgtgactgcaggt
gtgaagaatctcttatcagatgggaggcagctggcgctgacaaggacagttgacgctctg
attgaagggaaaccaaacccagaggtggatgactacctcctttttgacccacgagcccct
aggtcaggaactggtggtcagtttaaaggacccttcagagaagctattgttttcatgatc
ggtggtggaaactacattgagtacaggagcttgatggagctagaacaacgcacacagcct
tcaaagcatgttatatatggtgcaacagaaattcttagcggcgcggagtttattcaccaa
cttgcagaattggggcagaaagctggattgggtggtgggagcagcaacataccaccaggt
gcggcgcagtag
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