Panicum virgatum (switchgrass): 120689726
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Entry
120689726 CDS
T07260
Name
(RefSeq) transcription factor MYC2-like
KO
K13422
transcription factor MYC2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04016
MAPK signaling pathway - plant
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120689726
04075 Plant hormone signal transduction
120689726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120689726
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120689726
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GFIT
Motif
Pfam:
bHLH-MYC_N
HLH
bHLH-TF_ACT-like_plant
bHLH_SAC51
bHLH_INO4
GTP1_OBG
Motif
Other DBs
NCBI-GeneID:
120689726
NCBI-ProteinID:
XP_039828048
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Position
9N:complement(50502401..50505092)
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AA seq
694 aa
AA seq
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MNLWTDDNASMMEAFMASADLPAFPWGAPAGGGASSAAATPPPPQVPPGFNQDTLQQRLQ
AMIEGSRETWTYAIFWQSSVDAATGASLLGWGDGYYKGCDDDKRKQRPLTPAAQAEQEHR
KRVLRELNSLISGAAAAPDEAVEEEVTDTEWFFLVSMTQSFLNGSGLPGQALFAGQPTWI
ASGLSAAPCERARQAYNFGLRTMVCVPVGTGVLELGSTDVVFQTAESMAKIRALFGGGAG
GGSWPPVQPPAQQQQPAPGADQAETDPSVLWLADPVMDIKESLSHHPSAEISVTKPPPPP
PQIHFENGSTSTLTENPSPSVHAPPPPPAPPQRQHPQNQGPFRRELNFSDFASNPSMAAA
PPFFKPESGEILSFGADSNSRRNPSPAPPAATASLTTAPGSLFSQHTATLTAAAANDAKN
NSNNNNNKRSMEATSRASNTNHHPAATANEGMLSFSSAPTTRPSTGTGTPAKSESDHSDL
DASVREVESSRVVAPPPEAEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRA
VVPNVSKMDKASLLGDAISYINELRGKLTALESDKDTLHAQIEALKKERDARPAPHAAGH
DAGPRCHAVEIDAKILGLEAMIRVQCHKRNHPSARLMTALRELDLDVYHASVSVVKDLMI
QQVAVKMASRVYSQEQLNAALYSRLAEPGTAMGR
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgtggacggacgacaacgcctccatgatggaggccttcatggcctccgccgac
ctccccgccttcccctggggggcgccggccgggggcggcgcctcgtcggccgccgccacg
ccgccgccgccgcaggtgccgccgggcttcaaccaggacacgctgcagcagcgcctgcag
gccatgatcgagggctccagggagacctggacctacgccatcttctggcagtcctccgtc
gacgccgccaccggcgcctcgctgctcggctggggggacggctactacaagggctgcgac
gacgacaagcgcaagcagaggccgctcacgcccgccgcccaggccgagcaggagcaccgc
aagcgcgtgctccgcgagctcaactcgctcatctccggcgccgccgccgcccccgacgag
gccgtcgaggaggaggtcaccgacaccgagtggttcttcctcgtctccatgacgcagtcg
ttcctcaacggctcgggcctcccggggcaggcgctcttcgccggccagcccacctggatc
gcctccggcctctccgccgcgccgtgcgagcgcgcgcgccaggcctacaacttcggcctc
cgcaccatggtctgcgtccccgtcggcacgggggtgctcgagctcggctccaccgacgtt
gtcttccagaccgccgagagcatggctaagatccgcgcgctctttgggggcggagcaggg
ggcggctcgtggccgccggtgcagcctccggcgcagcagcagcagcccgcgcccggagcg
gaccaggcggagacggacccctccgtgctctggctcgccgacccggtcatggacatcaag
gaatccctgtcgcaccacccgtcagccgagatctccgtcaccaagccgccgccgccgccg
ccccagatccacttcgagaacgggagcacgagcactctcacggagaaccccagcccctcc
gtgcacgcgccccctcccccgccggcgccacctcagcggcagcacccgcagaaccagggc
cccttccgccgggagctcaacttctccgacttcgcgtccaatccctccatggcggcggcc
ccccccttcttcaagcccgagtccggcgagatcctcagcttcggcgccgacagcaacagc
cggaggaacccgtcgccggcgccccccgccgccacagccagcctcaccaccgcgcccggg
agcctattctcgcagcacacggcgaccctgacggccgccgcggcgaacgacgcgaagaac
aacagcaacaacaacaacaacaagcgttcgatggaggccacctctcgcgccagcaacacc
aaccaccacccggcggcgacggctaacgagggcatgctgtcgttctcgtcggcgccgacg
acgcggccgtcgaccggcacgggcacgccggccaagtcggagtcggaccactcggacctg
gatgcctcggtgcgcgaggtggagagcagccgcgtggtggcgccgccgccggaggcggag
aagcggccgcgcaagcgcgggcgcaagccggcgaacggccgcgaggagccgcttaaccac
gtcgaggcggagcggcagcggcgcgagaagctcaaccagcgcttctacgcgctgcgcgcg
gtggtgcccaacgtgtccaagatggacaaggcgtcgctgctcggcgacgccatctcctac
atcaacgagctccgcggcaagctgacggcgctggagtcggacaaggacacgctgcacgcc
cagatcgaggcgctcaagaaggagcgcgacgcgcggccggcccctcacgctgccgggcac
gacgccgggccgcgctgccacgcggtggagatcgacgccaagatcctggggctggaggcc
atgatccgcgtgcagtgccacaagcgcaaccacccgtcggcgcggctgatgacggcgctg
cgcgagctggacctggacgtctaccacgccagcgtctccgtcgtcaaggacctcatgatc
cagcaggtcgccgtcaagatggccagccgcgtctactcacaggagcagctcaacgctgcc
ctctacagtcgcctcgcggagcctggcaccgccatgggcaggtaa
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