Panicum virgatum (switchgrass): 120689745
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Entry
120689745 CDS
T07260
Name
(RefSeq) RNA-binding protein 28-like
KO
K14573
nucleolar protein 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120689745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120689745
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
120689745
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_7
RRM_RdRP1_2
RRM_5
Motif
Other DBs
NCBI-GeneID:
120689745
NCBI-ProteinID:
XP_039828076
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All DBs
Position
9N:complement(3919337..3928792)
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AA seq
926 aa
AA seq
DB search
MGKRKQHGGGGEPAAEGDAATGGTGGGHSPSTVFVSNLPYTFKSSDLEAVFSEVGPVRRC
FMVAEKGSETSRGFGFVQFATVQDAERAIQQKNGFHVAGRKIRIKLAMNRAPLKERLQKK
ENMQAKNSDAIDEANDTSAAAKLNENSIKADPEKPQMLAKDAMVSKEASIGDTDKVKSSE
KQRVAKTVIFGGLQDFAMASEVFRQAGEIGPVVSVNYPLPKEEMELHGLAGDGCTSDAAA
VLFSSVKSAWDSVVRLHRKEVKGAIVWARQLGGEGSKIRKWRVIVRNLPFKITEKEIMNM
FSSAGFVWDVSIPHKSDEGLSKGFAFVSFTRKKDAENAIKNINGKVVAKRPVAVDWAVPK
KVYTVAAKSDAKDNELANVPDSGSDDDTSEENLVGEDDSSELDQEIPNHPSEDDFKTEVD
ISRRILENLIKSSEKSEPSGIDGLNIDTDTETENDTSEKKKPDSPIVGKLAKSKRVTDAK
ITDPASKPEQKDTDLDRTIFISNLPFDISNEEVTVRFSVFGKVESFFPVLHKLTKRPRGT
GFLKFSTAEAADAAVSAANAAPGLGIFMKSRALNVMKAMDKESAHKKALEKAKTEVEDRR
NLYLAKEGEILAGTPAAEGVSDADMNKRNWLARRKVEMLQSPKFHVSRTRLIIYNLPKTM
TINDVKKLCREAVISRATRQNPVIRKVNILKNEKKGVQKHSRGVAFVDFQEHEQALVALR
VLNNNPETFGAERRPIVEFALEDVEKVRLQKIWKERHHKSAAEAAQDQQNPSGDQPAGNG
GHADSSRTFRKGNKRKSHDRPSKPSDSGEGPAKDPSVAGDRSAVEVMRKGRPAKRSRKSN
EGPVLPERDQDASPNAARKQAVSSERDQSVAPKKRKNIKDSWTEQKRGKGTKRTKKEPTR
EGRVDKSLVEQYRSKFLQHGVSKTKG
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagcggaagcagcacggcggcggcggagaacccgccgcggaaggcgacgcggcc
accggcggcactggaggaggacacagcccctccaccgtgttcgtctccaacctgccctac
accttcaagtcctccgatctcgaggcggtgtttagcgaggtcggcccggtgcggcgctgc
ttcatggttgcggagaaaggatcggagacgagtcgaggttttgggttcgtgcaattcgca
actgttcaagatgctgagcgagctattcaacaaaagaatggatttcatgttgctggtagg
aaaatcaggataaaactagcgatgaatcgtgccccgctgaaggaacgtttgcaaaagaag
gagaatatgcaagcaaagaactctgatgcaatagatgaagcaaatgatacttctgctgct
gcaaagcttaacgagaactccattaaagcagatccagagaaaccacagatgttggcaaag
gatgctatggtatcaaaggaagcttccattggtgacactgataaagtgaaaagttctgaa
aagcaaagggttgcaaaaacggtgatttttggtggtctgcaagactttgccatggccagt
gaggttttccgtcaagctggagagattggtcctgttgtatctgtaaactatccacttccc
aaagaggaaatggaactccatggacttgctggagatggatgcacatcagatgcagcagct
gtacttttttcaagtgtcaaatcagcttgggattctgttgtccgcctgcatcgtaaggag
gtcaagggagcaattgtttgggctcgtcaacttggtggagagggttcaaagatcaggaaa
tggcgagtgattgtcagaaacctgccattcaagattacagaaaaggagatcatgaatatg
tttagttcagcaggttttgtctgggatgtgtctattccacataagtcggatgaggggtta
tcaaaaggctttgcttttgtatctttcacacggaagaaggatgcagaaaatgctataaaa
aacattaatgggaaagttgttgcaaagagacctgtggctgttgattgggctgttcccaaa
aaagtatacactgttgctgcgaaatctgatgccaaggataatgagcttgccaatgttcct
gacagtggcagtgatgatgacacctctgaagagaaccttgttggagaagatgatagctct
gaacttgatcaggagattcctaatcatccatctgaggatgatttcaaaactgaagtagat
atttctagaagaattcttgaaaatttgatcaagtcatcagagaagtctgaaccatctggc
attgacggtttgaacattgatactgacactgaaacagaaaatgacacatcagaaaagaag
aaacctgattcacctatagttggcaagttggctaagtcgaaacgtgtaacagatgcaaaa
atcactgatcctgcttccaaacctgagcaaaaagatactgacctggataggactatattc
atcagcaaccttccttttgatataagtaacgaggaggtaacagtgcgcttctcagttttt
gggaaggttgaatctttcttcccggttcttcataaactcacaaagagacctagaggtact
ggttttctaaagttttcgacagcagaggcagctgatgcagcagtttcagccgccaatgct
gctcctgggttgggaatatttatgaagagcagggcacttaatgtcatgaaagcaatggac
aaggagtctgctcacaaaaaggcacttgagaaggcgaagactgaggttgaggatagacgg
aatctgtacttggccaaggagggtgaaatacttgctggaacaccagctgctgaaggggtg
tcagatgctgatatgaacaaacgcaactggttggctagaaggaaagtggagatgcttcag
tcaccaaagtttcacgtgtccagaacaaggcttatcatctacaatttacctaagactatg
accattaatgatgtaaagaagctttgcagagaagcagtcatttctcgtgctaccagacaa
aatcctgtcatccgaaaggtgaatatcctgaaaaatgaaaagaaaggggtacagaagcat
tcccgtggtgtagcctttgttgattttcaagaacatgagcaggctcttgttgctctaaga
gttctaaacaacaaccctgaaacttttggtgcagaacggcgtccaattgtggagtttgca
cttgaggatgttgaaaaggttaggcttcagaagatttggaaggaacgtcatcacaagtca
gcagcagaagctgcacaagatcagcagaatccttcaggggatcaacctgcaggcaatggt
ggtcatgcagatagcagcaggacattcagaaaaggaaacaagcggaagtcacatgataga
ccatctaaaccctctgattctggtgaagggcctgccaaggatccttcagttgctggagat
cgaagtgccgtggaagttatgagaaagggaagacctgcaaagagatcaaggaaatcaaat
gagggtcccgttttgccggagcgagatcaagatgcaagcccaaatgctgctaggaagcaa
gctgtgtcaagtgagcgtgatcaatcagttgctccaaagaaaaggaaaaacataaaagac
agctggacagaacaaaagagaggaaagggtacaaagaggacaaagaaagaacctaccagg
gaaggacgcgtagataagtctctggtggagcagtatcgttccaagttcttgcaacatggc
gtgagcaaaaccaaagggtag
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