Panicum virgatum (switchgrass): 120689751
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Entry
120689751 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120689751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120689751
03012 Translation factors [BR:
pvir03012
]
120689751
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120689751
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120689751
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120689751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
NACHT
AAA_19
ABC_tran
BEX
Motif
Other DBs
NCBI-GeneID:
120689751
NCBI-ProteinID:
XP_039828081
LinkDB
All DBs
Position
9N:24280444..24292578
Genome browser
AA seq
1027 aa
AA seq
DB search
MLLHSSACRGSHLLLLASCSNISGWFLHLPFASTHLETLGALRILADMSYRGGPNSHRGS
GRGGGGGRGGRGGGGGRGEQRWWDPQWRAERLRQMQREVEKVDENEWWDRIGQLREGTQQ
ELVVKRNFGRDGQNILADMARRQGLYFNAYNKGKTLVFSKVPLPDYRADLDERHGSTQKE
IKMSNQTERRVEDLLSRSKLSTNDSASSSNVSMRQSLPSTSSSVVEQPADIDKEKLSSQL
RNLQNSRKMTPSARSMQSFREKLPAFNMREGFLKAVAANQVLVISGETGCGKTTQLPQFI
LEEEIDNLRGADCSIICTQPRRISAISVATRVASERGEELGETVGYQIRLESKRSAQTRL
LFCTTGVLLRRLVQEPDLVGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVLMSA
TINAELFSKYFGDAPIMHIPGFTFPVTELFLEDVLEKTRYKIRSECDSSAGSSRKKRFSS
VKSDPLSDLFEDIDIDKEYGNFSITTRQSLEAWSADKLDLSLVESTIEYICRYEAEGAIL
VFLTGWDEISKLLDKIKGNTFLGSSNRFLVLPLHGSMPTVNQREIFDRPPVDMRKIVLAT
NIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQAGFC
YRLYPKVIHDAMPQFQLPEILRTPLQELCLTIKSLQLGAVSSFLAKSPQPPDPLSVKNAI
ELLKTIGALNDMEELTSLGRHLCTLPLDPNLGKMLLMGSVFQCLDPVLTIAAALAYRNPF
VLPIDRKEEADAVKRSFAGDSCSDHIALLKAFVAWKEAKCSGRERSFCWESFLSPMTLKM
MDDMRNQFFDLLSDIGFVSKTRGVKAYNQYGSDLEMVCAVLCAGLYPNVVQCKRQGKRTA
FYTKDVGKVDIHPSSVNAFVNQFPLPYLVYSEKVKTASIYVRDSTNISDYALLLFGGSLI
PSKTGEGIEMLGGYLHFSAPKRTIELIQRLRGELDKLLERKIEEPGLDIFSEGKGVVAAA
VELLHSH
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgctcctccactcttccgcctgccgcggcagccacctcctcctcctcgcctcctgtagc
aacatcagcggctggttcctccacctccctttcgcgtccacccaccttgaaaccctaggt
gcgctcaggatacttgccgacatgtcgtaccgcggcgggcccaactcccaccgcgggagc
ggccgaggcggcggcggaggcaggggaggccgcggtggcggcgggggacgcggggagcag
aggtggtgggaccctcagtggcgcgcggagcggctccggcagatgcaacgggaggtggaa
aaggttgatgagaatgaatggtgggataggatcggacaattaagagaaggcacccaacag
gagctagtagtcaagcggaattttggacgggatggacagaacatacttgcagacatggct
cggagacaagggctttactttaatgcatacaacaaagggaagacactggttttcagtaag
gtgccattacctgattatcgagcagatcttgatgagaggcatggatcaactcaaaaagag
attaagatgtctaatcagacagagaggcgagtggaagaccttttgtccaggtcaaagttg
agtaccaatgattctgcaagctcatctaatgtatcgatgaggcaatctttgcctagcaca
tcctcatcagttgttgaacaaccagcagatattgataaagaaaagctcagctctcagctt
aggaatttgcagaattcaaggaagatgacgccaagtgctagatcaatgcagtctttcagg
gagaaattacctgcattcaatatgagagaaggatttttgaaagcagtagcagctaatcag
gttctggtcatttctggtgagacaggttgtggtaaaacaacccagcttccacagttcatt
ctagaagaagaaatagataacctccgtggtgctgattgcagcataatctgtactcagccc
cgtcgtatatctgccatatcagtagcaacaagagtagcttctgagagaggtgaagagctt
ggtgagactgttgggtaccagattcgcctagaatcaaaacggtctgcacaaacacgactg
ttgttctgcactactggagttctgcttagaagactggttcaagagccagacttagttggt
gtaagtcatttactagttgatgaaattcatgaacgtggcatgaatgaagattttctcatc
ataatactgcgtgaccttctgccaagacgtccagaccttcgtcttgtattgatgagtgca
actataaatgcagaactgttttccaagtacttcggagatgctccaataatgcacatcccg
ggtttcacctttcctgttactgagctttttctggaagatgtcttagaaaagactcgttac
aaaatcaggtccgaatgtgatagttctgctggtagttcgagaaaaaagaggttttcatca
gttaagagtgatccattatctgatctttttgaggatatcgacattgataaggaatatgga
aatttcagcattacaacaagacagtcccttgaagcttggtctgctgataaactagatttg
agcctggtagaaagtacaattgagtatatttgtcgctatgaagcagaaggtgcaattctt
gtcttccttactggctgggatgaaatttcgaaacttctggacaaaattaaagggaatact
ttccttggaagttcaaacagattccttgttcttcctttgcacggttctatgccaactgtc
aatcagcgtgaaatttttgacagaccgccagttgatatgagaaaaattgtcctggcaacc
aatattgcggagagtagtatcactatagatgatgttgtctatgtaattgattgtggtaag
gcaaaggaaacaagctatgatgccttgaacaagcttgcatgccttctaccatcatggata
tcaaaagcttctgctcatcagaggcgaggccgtgcaggccgtgttcaggcagggttttgc
tataggctttatccaaaagtcattcatgacgcaatgccacagtttcaattgcctgaaatt
cttaggactcctttgcaagaactatgccttactatcaaaagcttacagcttggagcagta
tcctcctttttggcaaaatcaccgcaacctcccgatcctctttctgtcaagaatgcaatt
gagcttcttaaaaccattggcgcactcaatgatatggaggaactcacttctctaggacga
catctctgtacacttccattggatccaaatcttggaaaaatgctacttatgggatctgta
ttccagtgcctggatccagtattaacgattgctgctgctcttgcataccgtaatccattt
gtgctcccaattgatagaaaagaagaagctgatgctgttaaaagatcatttgctggtgat
tcctgcagtgatcacattgctcttcttaaggcgtttgtagcatggaaggaagcaaaatgt
agtggcagagaacgttctttctgttgggaaagttttttgtctcccatgaccctgaagatg
atggacgacatgcgaaatcaattctttgatctactctctgatattgggtttgttagcaag
acaagaggagtgaaggcatataaccagtatggcagcgatctcgagatggtttgtgctgtc
ttgtgtgctggcctttacccgaatgtcgtacaatgtaaaaggcaaggaaagaggacggct
ttctacaccaaagatgtgggaaaagtggacattcatccatcatcggtgaatgcatttgtg
aaccaatttccattaccttacttggtttacagtgagaaggttaagacggctagcatctat
gtgagggactccacaaatatatcagactatgcccttttactttttggtggttcccttatt
ccaagcaaaactggagaaggcattgagatgctcgggggttatcttcatttctcggcccca
aagcgtacaatagagttgattcagagattaagaggtgaattggataaactcctcgagagg
aagattgaggaacctggacttgacatcttttcagaaggaaagggtgttgtggcggcagct
gtagaacttttgcacagtcactag
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