Panicum virgatum (switchgrass): 120689809
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Entry
120689809 CDS
T07260
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120689809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120689809
03009 Ribosome biogenesis [BR:
pvir03009
]
120689809
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120689809
Spliceosome [BR:
pvir03041
]
Complex A
U2 snRNP components
U2 related factors
120689809
Complex B
120689809
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120689809
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
Helicases
120689809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
SRP54
nSTAND3
AAA_30
T2SSE
AAA_7
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
120689809
NCBI-ProteinID:
XP_039828158
LinkDB
All DBs
Position
9N:complement(66462048..66466047)
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AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRGATNGAAAAVGGANPTVNRWNGRPYSARYFEILE
KRRTLPVWQQKEEFLRALRDNQALILVGETGSGKTTQIPQFVLETEGLGNRSMVACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKY
KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPG
RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINN
MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIV
YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGN
LTQLGEMMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLSVPNCFLRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINARALKSADNVRQQLVRIMTRFNLK
MCSTDFNSREYYVNIRKALLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWV
IYNEYVLTTRNFIRTVTDIRGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKRERERATN
RG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcggaaggtgagcctcttcgacgtggtcgacgagacctccgtc
tccgccaagctcggccgcggcgccactaacggcgccgccgccgccgtgggcggggccaac
cccaccgtcaaccggtggaacgggcggccatactcggcgcggtattttgagatcctcgag
aagcgacgcacgctccccgtgtggcagcagaaggaggagttccttcgcgccctccgcgac
aaccaggccctcattctcgtcggcgaaacgggaagcggaaagaccactcagatcccccaa
tttgtacttgagactgaaggcctgggtaaccgttcaatggttgcctgcactcagccgcgg
agggttgcagcaatgtcagtctccaggcgtgtggctgaggaaatggatgttactattggg
gaggaagtgggatacagcatccgttttgaggattgcagcagccacaaaactgttctcaaa
tatttgacagatggtatgcttctgagagaagcaatggcagacccacttttagagaagtac
aaggtgattgttcttgatgaggctcatgagagaacattggcaacagatgttctgtttggg
cttctgaaggaggttctaaaaaatagaccggatttgaagcttgtcgttatgagtgctacc
cttgaagcagagaaattccagggttacttcagtggtgcaccattgatgaaggtaccaggg
aggcttcacccggttgaaatcttctatactcaagaaccagaaagggactacctagaggct
gctatcaggacagttgtgcaaatacacatgtgtgaacctgctggtgatatccttgtattc
cttacaggagaagaggagattgaggatgcctgtcgtaaaattaacaaggaaattaataac
atgggagatcaggttggccctgttaaagttgtgcctttgtattctacgctgcctccagcc
atgcagcagaagatttttgaacctgctcctgccccgttgaaggaaggaggccctcctggg
agaaaaattgttgtgtccacaaatattgctgagacatccttaactatagatggtatagtt
tatgtgatagatccagggttttccaagcagaaagtttacaacccaaggataagggtggaa
tccctcctggtgtcaccaatttccaaggcaagtgctcatcagagagctggtcgtgctgga
agaacgcagcctggaaagtgcttcaggctatacactgagaagagttttaatgaggatttg
caaccacaaacctacccagaaattcttaggtcgaacctggcaaatacagttcttaccttg
aagaaacttggaattgatgatttagtacattttgactttatggatcctccagcaccggaa
actcttatgagggctttagaagttttgaactacttgggggcacttgatgatgacggtaat
ctaacacagttaggtgaaatgatgagcgagtttcccctggatccacaaatgtcaaagatg
cttgtcatcagtccaaagtacaactgttcgaatgagatcctatcaatatctgccatgctt
tcagtacccaattgcttcctccggcctagggaggctcaaaaggctgctgatgaggcgaag
gctcggtttggccatattgatggggaccatctcacgcttctgaatgtataccacgcatac
aagcaaaacaatgaagatccccagtggtgttacgagaactttatcaatgccagagcactt
aagtctgcggacaacgtcagacaacagcttgttcgcatcatgactagattcaatctcaag
atgtgcagcacagacttcaatagccgtgagtactatgtcaatatcaggaaagcactgctt
gcagggtatttcatgcaggttgctcacctggagcgcactggacattacctgactgtaaaa
gataatcaggtcgtccatcttcatccctcaaactgcatggaccataagccagagtgggtc
atctacaacgaatacgtcctgacaactaggaatttcatccgcacagtcacagatatccgt
ggggaatggctgattgatatcgctccacactactatgatctgagcaacttcccgtcatgc
gaggcgaagcgtgttcttgagaggctgtataacaagcgggagagggaaagggccacgaac
agaggttga
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