Panicum virgatum (switchgrass): 120689860
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Entry
120689860 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase DIS1-like isoform X1
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120689860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120689860
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120689860
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120689860
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
FAIM1
zf-RING_UBOX
zf-Di19
Motif
Other DBs
NCBI-GeneID:
120689860
NCBI-ProteinID:
XP_039828230
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Position
9N:63448841..63451902
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AA seq
320 aa
AA seq
DB search
MKNNITSSFSRPYNSKILMMATAGYIDDSCSEVIDPPKTEVLDVTELTGDHIQQPPKPNV
VVSSSVRDLLECPVCLSAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALE
KVAASLELPCKYQSFGCSGIYPYYSKLKHESQCQYRPYSCPYAGSECTVAGDIAYLVNHL
KNDHKVDMHNGCTFNHRYVKPNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIA
FLRFMGDDAEAKNYSYSLEVGGTGRKMIWQGVPRSIRDSHRKVRDSYDGLIIQRNMALFF
SGGDRKELKLRVTGRIWKEQ
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataacatcacatcctcgttctcaagaccatataattccaagatcctgatgatg
gccacagctggttatattgatgattcctgttctgaggttattgatcccccaaagactgag
gtactggatgttactgaactcactggcgaccatattcagcagccaccaaaaccaaatgtg
gtggtgtctagcagtgtgcgtgatcttctggaatgtccagtctgcttgagtgccatgtat
cctcctattcatcagtgctctaatggtcatacattgtgctcaggatgcaaaccaagggtt
cataatcgctgtccaacttgtaggcatgaactgggtaacataagatgccttgctctcgag
aaggtggctgcatctcttgaacttccatgcaagtaccagagctttgggtgctcaggcata
tatccttactacagcaagctgaagcatgagtctcagtgccaatataggccttacagctgt
ccatatgctggatctgaatgcacagttgctggtgacattgcatacttggtaaatcacttg
aaaaatgaccacaaagttgacatgcacaatggctgcactttcaaccatcgctatgtcaag
ccaaaccctcatgaagtcgagaatgccacctggatgcttacggtgttcagctgctttggc
caatacttctgcctacactttgaagcctttcagcttggcatggcacctgtctatattgcc
ttcctgagattcatgggagatgatgcagaagcaaagaactacagctacagcctggaggtg
ggaggcaccgggcgcaagatgatctggcaaggggtgccacggagcatcagagatagccac
cgtaaggtccgtgacagctatgacgggctgatcatccagcggaacatggctctgtttttc
tcaggaggggacaggaaggagctcaagctgcgggtcactgggagaatatggaaggagcag
tag
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