Panicum virgatum (switchgrass): 120689988
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Entry
120689988 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP58-like isoform X1
KO
K14307
nucleoporin p58/p45
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120689988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120689988
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120689988
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_FG2
Motif
Other DBs
NCBI-GeneID:
120689988
NCBI-ProteinID:
XP_039828426
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Position
9N:6705371..6710699
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AA seq
474 aa
AA seq
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MPTPTAGAPVATSLPLAPPGLSQSQQLLEAGAAARMLEQRRHAELLGPFGEHRQRRQQAL
AAEAGLQQAWAAAAARPQPQVLMLYTVDGGAAGYDTKWEDLHPVSQGLLLQIEDSIREYR
YDSERLVECSHLDHLSPFNFEFDAGQISQQEAASISTIMNREKISIESLMTVIKEILWNT
DYAIHSYVKLRPRFVHLSAGIANHSGSSDAQTDFSQLLTMAPSFHCYSSATRRPSPFVQH
TVARFEDQLGECCKWILDLEQLVQMKNGKTFAESLESLSKVVSNIHDYLMHVASKVEHIH
QSAETMKTQYLKDRRCRGDLSNPFHKANRREEAKQQATAGIIHPMLHLSPLGQPTTLVAV
PMISSQLQQTLFPIVATSPNPALPLPSVLPSFSTQTSPAPLTNPFSSPGSVLQSTPFGSL
SSPELGSMLVSSSFRTGIPSSATLPFSIPYEGGMTASGINRVPSGGRKPPRRNR
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcctacggccggtgcgcccgtggcgacttcgcttccccttgcgcctcctggg
ttatcgcagtctcagcaattgctggaggcgggagcggcggcgcggatgttggagcaacgg
cgtcatgcggaattgcttgggccgtttggggagcatcggcagcggcgccagcaggcgttg
gccgcggaggcgggtttgcagcaggcgtgggcggcggcggcggcgcggccgcagccgcag
gtgctgatgctgtacacggtggatgggggtgccgccgggtacgacaccaagtgggaggac
ctgcacccggtctcccaggggcttctccttcaaatcgaggacagcattagggagtacaga
tatgatagtgagcggttggttgagtgcagccaccttgatcacctatcaccgttcaatttt
gaatttgatgctggtcagattagtcagcaggaggctgcatctatttctaccatcatgaac
agagagaagatttcaattgagagcttaatgactgttatcaaagaaattttatggaacacc
gattatgctatacattcctatgtaaagctgaggccaaggtttgtgcatttaagtgctgga
attgctaatcactctggatcttctgatgctcagactgatttcagtcagctcttgactatg
gcaccaagctttcattgttatagtagtgctacaaggaggccttctccttttgtgcaacac
acagttgccaggtttgaggatcaacttggagaatgctgcaaatggattctagatctagaa
cagcttgtccagatgaagaatggtaaaacctttgcagaatctttggaatctctgtcaaaa
gttgtgtctaatatccatgactatctaatgcatgtggcgtctaaggtggaacatattcat
cagagtgctgaaacaatgaagactcagtatctgaaggatcgacgatgcaggggtgatttg
agtaatccttttcacaaggcaaatagaagagaggaagctaaacaacaagcaactgccgga
ataatccatccgatgttgcatctatcacctctaggccagccaacaacactggttgctgtg
ccaatgatatcaagccagctacagcaaactttattccccatcgtagcaacttccccaaac
ccagctcttccactgccttctgttttgccttcattcagcacgcaaacaagtcctgctcca
ttaaccaaccctttcagttcacctgggtctgtgttgcagtcgacaccatttggttcatta
tcctcacctgaacttggatccatgctggtttcatcttcgttcaggactggcatcccatct
tctgctactttgcctttctcaataccatacgaaggtggaatgacagcttcaggcatcaat
cgagtaccttccggcggaaggaagccacccagaagaaaccgctaa
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