Panicum virgatum (switchgrass): 120690045
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Entry
120690045 CDS
T07260
Name
(RefSeq) cyclic nucleotide-gated ion channel 2-like
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
120690045
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pvir04040
]
120690045
Ion channels [BR:
pvir04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120690045
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
IQ
Motif
Other DBs
NCBI-GeneID:
120690045
NCBI-ProteinID:
XP_039828497
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Position
9N:complement(7254357..7259088)
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AA seq
725 aa
AA seq
DB search
MPPLAFIRSLPARLLERVCDGVRGSPAAVRDEESGGSGRSAAAAGHPAGECYACTQPGVP
AFHSTTCDQVHEPGWDADAGSSLVPVQAQQQAPPAPASAAQHAGAAARWLFGPVLDPRSK
RVRRWNRWILLGRAAALAVDPLFFYALSIGRAGQPCLYIDAGLAAAVTALRTCADAGHLA
HVLLQFRLAYVSRESLVVGCGKLVWDARAIAAHYARSAKGLWFDLFVILPIPQVIFWLVI
PKLIREEQVKLIMTILLLMFIFQFLPKVYHSIHIMRKMQKVTGYIFGTIWWGFGLNLFAY
FIASHIAGGCWYVLAIQRIASCLQEECKKNNSCDLISLACSNEICFHPPWSSNINGFACD
TNMTSFGQQNMSTCLSGNGSFAYGIYLGALPVISSNSLAVKILYPIFWGLMTLSTFGNDL
APTSNGLEVIFSIINVLSGLMLFTLLIGNIQVFLHAVLARKRKMQLRFRDMEWWMRRRQL
PSRLRQRVRKFERERWAAVTGDEEMEMIKDLPEGLRRDIKRYLCLELVKQVPLFHGMDDL
ILDNICDRLRPLVFSSGEKVIREGDPVQRMVFILEGKLRSTQPLTKGVVATCMLGAGNFL
GDELLSWCLRRPFVDRLPASSATFECVEAAQAFCLDAPDLRFITEHFRYKFANEKLKHTA
RYYSSNWRTWAAVNIQLAWRRYRARKVDATAMAPPPLATGPDDGDRRLRHYAAMFMSLRP
HDHLE
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccctcgcgttcatccgctccctccccgcgaggctgctcgagcgagtgtgcgat
ggagtccgggggagcccggccgcggtgcgggacgaggagtccgggggcagcggccggtcg
gcggcggcggcggggcacccggcgggagagtgctacgcgtgcacgcagccgggggtgccg
gcgttccactccacgacctgcgaccaggtgcacgagcccggctgggacgccgacgcgggg
tcctcgctagtgccggtccaggcgcagcagcaggccccgccggcgccggcgtcggcggcg
cagcacgcgggcgccgcggcgcggtggctgttcggccccgtgctggacccgcggagcaag
cgcgtgcggcgctggaaccggtggatcctgctgggccgggccgccgcgctggcggtggac
ccgctcttcttctacgcgctctccatcggccgcgccggccagccctgcctctacattgac
gccggcctcgccgccgcggtcaccgcgctccggacctgcgccgacgccgggcacctcgcg
cacgtcctgctccagttccgcctcgcctacgtctcccgcgagtccctcgtcgtcggctgc
ggcaagctcgtctgggacgcccgcgccatcgccgcgcactacgcccgctccgccaagggc
ctctggttcgacctcttcgtcatcctccccatcccgcaggtcattttctggctggttata
ccgaagttaataagggaagagcaagttaaacttatcatgacaatattgctgctcatgttc
atatttcaattcctccccaaggtgtaccacagtattcatatcatgaggaaaatgcagaag
gtgactggttacatctttggaacaatatggtggggatttggtctaaatctatttgcctat
ttcattgcgtctcatatcgcaggtggttgttggtacgttcttgcaattcagcgtattgcc
tcctgccttcaggaagaatgcaagaaaaacaacagctgcgatctaatatcgcttgcttgt
tcaaacgagatatgttttcaccctccttggtcatcaaatattaatggattcgcatgtgac
acaaacatgacctccttcggtcaacaaaacatgtctacctgtctaagtggaaatgggtcc
tttgcttatggtatctatttgggggctcttcctgttatatcaagcaattcgcttgctgtc
aaaatactctatcctatattttggggcctcatgactctcagtactttcggtaacgatctt
gcccctacgagcaatggtctcgaggtgatattcagcataataaatgtcctcagtggcttg
atgctcttcacactgctgatcggaaacatacaggtatttctacatgccgtcctggcaagg
aagcggaagatgcagctgcgtttccgggacatggaatggtggatgagacggaggcaactg
ccgtcccgcctgaggcagagggtccgcaagttcgagcgcgagcgctgggcggccgtcacg
ggagacgaggagatggagatgatcaaggacctgcctgaaggactcaggcgagacatcaag
cgctacctctgcctcgagctggttaagcaggttccgctgttccatggcatggacgacctg
atcctggacaacatctgcgaccggctgcggccgctggtgttctccagcggcgagaaggtg
atccgcgagggcgacccggtgcagcgcatggtgttcatcctggagggcaagctccggagc
acgcagccgctgaccaagggtgtggtggcgacgtgcatgctgggcgcgggcaacttcctg
ggcgacgagctgctgtcgtggtgcctgcgccgccccttcgtggaccggctgccggcctcg
tcggcgacgttcgagtgcgtcgaggcggcgcaggcgttctgcctcgacgcgccggacctg
cgcttcatcaccgagcacttccggtacaagttcgccaacgagaagctcaagcacacggcg
cgctactactcgtccaactggcggacctgggccgccgtcaacatccagctcgcgtggcgc
cggtacagggccaggaaggtggacgcgaccgcgatggcgccgccgccgttggccaccggt
cccgacgacggggaccggcggctcaggcactacgcggccatgttcatgtcgctccggccg
cacgatcacctcgagtaa
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