Panicum virgatum (switchgrass): 120690104
Help
Entry
120690104 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120690104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120690104
03012 Translation factors [BR:
pvir03012
]
120690104
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120690104
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120690104
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120690104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
ATPase
T2SSE
AAA_19
ABC_tran
AAA_16
NACHT
ATPase_2
Myosin_head
Motif
Other DBs
NCBI-GeneID:
120690104
NCBI-ProteinID:
XP_039828560
LinkDB
All DBs
Position
9N:7939985..7946463
Genome browser
AA seq
1156 aa
AA seq
DB search
MRRGLRRGLGILLVPLPNAPSRPPPTSLADLLLHPHRLNGFSRRSLCSFPSGGRAVEQFS
DDEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKRM
GLYSEMYGRVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLSLD
KSGGNTGSSSEVAEKSDNVNLDEQQDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGSK
MLELRKSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNI
ICTQPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSD
RNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGAP
TIHIPGFTHPVRAHFLEDILERSGYRLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTL
VEDALKNSSFETYGSRTRDSLANWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDI
SCLKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKPPPNVRKVVLATNMAEASITI
NDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVY
DAFADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVEFLKMIGAL
DGNENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSVRDPFLLPQDKKDL
AGTAKSRFSSKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFS
YILKDSGLIDTDANVNNSLSHNQSLVRGIICSGLFPGIASVVHRESSMSFKTMDDGQVLL
YANSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGVVTKGSMAGHLKML
DGYIDFFMDPSLSECYLQLKEELDKLIQQKLEDPNFDIHKEGKYILYAAQELAAGDLCEG
RFVFGRETSRARLRGPEEEEGKSSLIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEF
RALVEFKGMQFVGKPKRNKQLAERDAAIEALGWLTQTSGVKPQDEGDDDSPLDLTDSMLK
LLTRPRRHSKNSSRKR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggcctgcgccgcgggctgggcatactcctcgtcccacttcccaacgcaccc
agccgcccgccgccgacctctctcgcggatctcctcctccacccccaccgcctcaatggc
ttctcccgccgctccctctgcagcttccccagcgggggccgcgccgttgagcagttctcc
gacgacgagtacgatcacgagtacgaggacctccggccgtcgtcgtcggtggcgaacatc
gacgagtggagatggaagctgagcatgctgcagcgcaacgccgaggagcaggagatcatc
tccagggaccggagggaccgccgggactatgaccagatcgccaacctcgccaagaggatg
gggctctacagtgaaatgtacgggagggtcatcgtcgcgagcaaggtcccactgcctaac
tacaggccggacctggatgacaagcgaccgcaaagagaggtggtgatcccactgagcttg
cagaggagagttgaaggacttgttcaggagcatctagatcgtgcactcttgtcactggat
aaaagcggtggcaacacgggaagtagttctgaggtggctgagaaatctgataacgtgaac
ctggacgagcagcaagattctctgcttgataggtcagtcatggagaagatacttcagagg
aagagcattcggatgcgtaattttcagagaagttggcaggaatcaccagaaggttctaag
atgctagagcttcggaaatcacttccagcatacaaggaaaaagaaaggcttctagcagcc
attgcacgtaatcaggttatagtaatttccggggagacaggatgtggtaaaacaacacag
ctgcctcaatttgtattagagtcggaaatagagtctggccgaggggccttctgtaacata
atttgtacgcagccacgaagaatatctgcaatggcagttgcagaaagagtatccactgag
agaggggagaatctcggtgaatcggttggctataaagttcgattggaaggaattaaggga
aaagacacacatttgcttttctgcaccagtggcattttactaagacgattgctgagtgac
cgaaacttgaatggtgtgactcatgtatttgttgatgaaatacatgaaaggggcatgaat
gaagatttcctgttgattgtactgaaagatctattatcacggcgccgtgatttgaggttg
atattgatgagtgctactctaaacgcggaactattctcaagttattttggaggagccccc
actatccacattcctggattcacacatccagtgagagcacattttctggaagatatattg
gagaggtcaggctacaggttgacctcaagcaatcagcttgatgattatggccaagataaa
gtctggaaaactcaaagacagctgctgcctagaaaaaggaaaaatcaaattactacactt
gttgaggatgccctgaaaaattcaagcttcgaaacatatggttccagaacgcgagattct
cttgcaaattggaatcctgattgcattgggttcaacctcatagaggctgttctgtgccac
atatgtcgcaaagagcgacctggtgctgttttagttttcatgaccggatgggatgatatt
agttgcttgaaggatcaactgaaagcgcacccattgttaggtgatccaaatagggttttg
ctgcttgcatgccatggttctatggctactgctgagcagaggctaatatttgagaagcca
cctcctaatgtccggaaggtagtcctagccacaaacatggcagaagcaagtattacaata
aatgatatcgtttttgttgtggattgtggcaaagcaaaggaaaccacatacgatgcgtta
aacaataccccctgcttactcccctcatggatttcaaaagcttccgcccgtcagaggagg
ggtagagctggccgtgtgcaacctggagaatgctatcatctctatcctagatgtgtgtat
gatgcatttgcagactatcagcttccggagcttcttagaactcctttgaattcattatgt
ttgcagataaaaagtttgcaagttggcagcattggggagttcttatcagctgctctacaa
cctcctgaaccactagctgtccaaaatgctgtggaattcctgaagatgattggtgcatta
gatggaaatgagaacctcactgatcttgggcgatacctttccatgcttccagttgatcca
aaattgggaaagatgcttataatgggtgcagtttttcgctgcatagatcctatacttact
gtagttgctggactgagtgttcgggaccctttccttttgccacaggacaagaaggatctg
gcaggaaccgcaaaatcaagattctcatcaaaggattatagtgatcatatggcccttgtt
cgggcttatgaaggatggaaggacgcggagagagaagggtctgcttatgaatactgctgg
agaaatttcctttctgctcagacactacaagctattcactcacttaggaagcaattcagc
tatattttaaaggattctggtttgatagacactgatgcaaatgtaaataacagtttgagc
cataaccaatcattggtccgtggcatcatatgttctgggcttttccctgggatagcgtct
gttgtgcatcgagaaagctcaatgtcatttaagaccatggatgatggccaagttcttctt
tatgctaattcggtgaatgcaaagtaccagaccatcccatatccatggttggtttttggt
gagaaggtgaaggtgaatgccgtcttcatccgtgattcaactggagtatcagactccata
ctgatcttatttggtggtgttgtcacaaaaggaagcatggctgggcacttgaagatgctc
gatggatacattgatttctttatggatcccagcctttctgaatgctacctgcaacttaaa
gaagaacttgataaacttatacaacagaagcttgaagacccgaactttgacatccacaag
gaaggcaagtacatcctgtacgcggcacaggagctcgctgcgggcgacctatgcgagggc
cggttcgtgttcgggcgcgagacgagccgggcgaggctccggggccccgaggaggaggag
ggcaagagcagcctgatcaaggacgggatgaaccccaagagcctgctgcagacgctgctg
atgcgcgcggggcacaccccgcccaagtacaagacaaagcacctcaagacgaacgagttc
cgggccctggtggagttcaaggggatgcagttcgtggggaagccgaagcggaacaagcag
ctggcggagcgggacgccgccatcgaggcgctggggtggctgacgcagacctccggcgtg
aagccgcaggacgagggcgacgacgactcgccgctggacctgaccgacagcatgctcaag
ctgctcacgaggccgaggcggcactcgaagaatagctctaggaaacggtga
DBGET
integrated database retrieval system
