Panicum virgatum (switchgrass): 120690109
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Entry
120690109 CDS
T07260
Name
(RefSeq) YTH domain-containing protein ECT4-like isoform X1
KO
K20102
YTH domain-containing family protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120690109
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120690109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-GeneID:
120690109
NCBI-ProteinID:
XP_039828564
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Position
9N:complement(7970147..7974390)
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AA seq
656 aa
AA seq
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MATVAPAPTVADQATNLMQKLSLESKKDGSSAAKKPSGLPYGSANAGDAQSAASQVDRSI
TPLLQEAMDPNFFYQPSGYASPAYYYPSGYDGSANEWDSRYAGHEGMEMPPQSVYGDIYH
GYGYAPYGPYPSGSPVPSAGHDVQSYGSQQYQYPTQYYQPPTSANATHGVNGASSQPELP
SVVNQQTRVLVDATKASPNGMPTANNSSLPRKQTHLNVPVASNGSYGRGPMQGGGPSASN
YGHSGLRSPAQWYDGPVYSNGHQRPTASSTSYRSNSSSAKNQSQHPTTNLMGMHAQMPSS
GMGLTSPSYPSRIYPDNRLFGQYGQYGNTLKGGLGFGSNVYNSRNNGRWGVVDTKYKPRG
RAPFGFGGENQDGFTELNRGPRSGGFKHQKQFGPTVTIAVKGQALPSAGKQNSALPDKGQ
YNQEGFPVAYKDAKFFVIKSYSEDDVHKSIKYNVWASTPNGNKKLDAGYREAQEKSSDCP
VFLFFSVNTSGQFVGVAEMVGPVDFDKTVEYWQQDKWNGCFPLKWHIVKDVPNNILKHIT
LDNNDNKPVTNSRDTQEVKLEQGLEMLKIFKEHVSKTSILDDFGFYENRQKLMQEKRANQ
QSLQGQTSDVSQEKDKDATDDKPGAQKHVLSKEGALAEEAANASKPVAESGVSNGN
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgttgctcctgccccgaccgttgccgaccaggccaccaatctcatgcagaag
ctgtctctggagagcaagaaggatggttccagcgctgccaaaaagccttctgggttgcca
tatggatctgccaatgctggagatgcgcagagtgctgcttcgcaggtggacaggtcgata
actcctctacttcaagaggccatggatcctaacttcttctatcagcccagtggatatgcc
tctccagcctattactatcctagtggttatgatggctcagccaatgagtgggactcaagg
tatgctggtcatgaaggaatggagatgccccctcagagtgtgtacggcgacatataccat
ggatatggctatgctccatacggcccatatccttcgggttctcccgtaccaagtgctggg
catgatgtccagtcatatggctctcagcaatatcagtacccgactcaatattatcagcca
ccaacctctgcaaatgcaacccatggtgtaaatggtgccagttctcaacctgagctgcct
tctgttgttaatcaacagacacgtgttttggtagatgcaacaaaagcaagtccaaacggt
atgccgactgctaacaacagctcgctgccacgtaagcagacccacctgaatgtaccagta
gcgagcaatggttcatatggaagaggacctatgcaaggtggcggaccttctgcaagcaat
tatggtcacagtggtcttcgttctccagctcaatggtacgatgggccagtttactcaaat
gggcatcaaagaccaactgccagttccacatcttaccgttccaattcatcttctgcaaaa
aatcagagccagcatccaacaacaaacctcatgggtatgcatgcgcagatgccctcgtct
gggatgggtctgacctcacctagctatccttctaggatataccccgacaacagattattt
ggacagtatggtcagtacggaaacacgctgaaaggtgggcttggttttggatcaaatgtg
tataactcaagaaacaatggaaggtggggagtcgtggatacaaaatacaagcctagaggg
cgtgcaccttttggttttggtggtgagaatcaagatggctttaccgagctgaacagagga
ccaaggtctggtggtttcaagcaccagaaacagtttgggcctactgtcactattgccgtg
aagggccaggccctcccttcagctggaaaacagaacagtgctcttccagacaaaggacaa
tataaccaggaaggatttcctgtagcctacaaggatgcaaaattcttcgttatcaaatca
tatagtgaagatgatgtgcacaagagtattaaatacaatgtgtgggctagcacccctaat
ggaaataagaagctggatgctggataccgagaggctcaggagaaatccagtgactgccca
gtgttcttgtttttctctgtgaacacaagtggtcagtttgtcggtgttgctgaaatggtt
ggccctgttgactttgataagactgtggagtattggcaacaagacaagtggaatggttgt
tttccactcaagtggcacatagtcaaggatgtgcccaacaacatcttgaagcatattacg
ctggataacaatgataataagcctgttacaaacagccgtgacacacaagaggttaagctt
gagcaaggtcttgaaatgttgaagattttcaaagaacatgttagcaaaacctcaattttg
gacgattttggtttttacgagaatcgccaaaaattgatgcaggaaaagagagcaaatcag
caatcacttcaagggcagacgagcgatgtttctcaagagaaagacaaggatgctactgat
gacaaaccaggggcacagaaacatgtattgagcaaggaaggcgctcttgctgaggaagcg
gcgaatgcctccaaacctgtagctgaaagtggtgtatcaaatggcaactaa
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