Panicum virgatum (switchgrass): 120690201
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Entry
120690201 CDS
T07260
Name
(RefSeq) phosphomethylpyrimidine synthase, chloroplastic-like
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00730
Thiamine metabolism
pvir01100
Metabolic pathways
pvir01240
Biosynthesis of cofactors
Module
pvir_M00897
Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
120690201
Enzymes [BR:
pvir01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
120690201
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Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-GeneID:
120690201
NCBI-ProteinID:
XP_039828708
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Position
9N:complement(13175521..13182289)
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AA seq
642 aa
AA seq
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MAALQPSFSSTMALRSSGSNLKFPKTALLPGFGGISRQDMQDRNASFACLIPKVASVTDQ
SIAEPSKPRKNKHTVDPTAPEFLPLPSFEECFPRSTKESSEIVHEESGHVLKVPFRRVHL
TGDQKHFDTYDTSGPQNISPRTGLPKIRKEWIDRREKLGSPRYTQMYYAKQGIITEEMIY
CAKRENLSPEFVRTEVARGRAIIPSNKRHLELEPMIVGRNFLVKVNANIGNSAVVSSIEE
EVHKLQWATMWGADTVMDLSTGQHIHETREWIIRNSPVPIGTVPIYQALEKVNGIAENLS
WEIFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLTYHKENF
AYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDSAQFAELLTQGELTRRAWAKDVQVM
NEGPGHIPMHKIPENMEKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTA
LLCYVTPKEHLGLPNRYDVKTGVISYKIAAHAADLAKGHPYAQAWDDALSKARFEFRWLD
QFALSLDPVTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDIRKYADEHGYGTVEE
AVKEGMNAMSAEFLAARKTISREQHGEAGGEIYVPESYAAHK
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacttcaaccctcattttcatcaacaatggctctgaggagcagcggcagcaat
cttaagttccccaaaactgcacttctacctggttttggtggcatttcacgtcaagacatg
caagacaggaatgctagcttcgcttgtttaatccccaaggttgcttcggtaactgatcag
tcaatagcagaaccatcaaaacccaggaaaaataagcacacagtcgaccctacagcacca
gaatttctgccactcccatcatttgaagaatgctttccaaggagtaccaaagaatcaagt
gaaatcgttcacgaggaatctggtcatgtcctcaaggtcccattccgaagagtccatttg
actggagatcagaagcactttgacacatatgacacaagtggtcctcaaaatataagccca
aggactgggctcccaaagataaggaaggaatggattgataggagggaaaagctgggtagt
cctcgttacacgcaaatgtattatgctaaacagggaatcataacagaggagatgatatac
tgtgccaagcgtgagaaccttagtcctgaatttgtccggacagaagttgcccgaggacga
gccataattccttccaacaagaggcacctggaattagaacccatgattgttggaagaaac
ttccttgtaaaggtgaatgcaaatattgggaattcagctgttgtgagctccatcgaggag
gaagttcacaagctccagtgggccacaatgtggggagctgatactgtcatggatctttca
actgggcaacatatccatgagactcgggaatggattattcgtaactctccagttcctatt
gggactgttcctatttaccaagcacttgagaaagtaaatggtattgcagaaaatctgagc
tgggaaatctttagggataccttgattgaacaagctgagcagggtgttgattacttcaca
atccatgctggtgtcctgcttcgttacattcctcttacagcaaagagaatgactggcata
gtttcgcgtggcggctccattcatgcaaaatggtgcttaacttatcacaaggagaacttt
gcttatgaacactgggatgacattcttgacatatgcaatcaatatgatgtggcgttatca
attggtgatggtctgaggcctggttctatttatgatgcaaatgatagtgctcagtttgca
gagctgttgactcaaggggaactaacacgtcgagcatgggcgaaagatgtgcaggtgatg
aatgaaggcccagggcacatcccaatgcataaaattcctgaaaacatggagaaacagctg
gaatggtgtaatgaggcacctttctatacgttgggtccactgacaactgatattgcacct
ggttatgatcacatcacctcagccattggtgctgccaacattggagctcttggcactgca
ctcctttgttatgtaacaccaaaggagcaccttgggctgcctaatcgttatgatgttaag
acaggtgttatatcctacaaaattgctgctcatgctgctgatttggcaaagggtcatccc
tatgcacaagcttgggacgatgcccttagcaaggcaaggtttgagtttagatggctcgat
caattcgctctatcgctagacccagtaactgccatgtctttccatgatgaaacattgcca
tctgagggtgccaaagttgcgcatttctgctcaatgtgtgggcccaagttttgttcaatg
aaaatcacagaggatattagaaagtatgcggatgaacatggctacggaacagtagaggaa
gctgtgaaggaagggatgaatgctatgagtgctgaatttttggctgcaaggaagacaatt
agcagggaacagcatggtgaagctggaggggagatctacgtaccagaaagctatgcagct
cacaaatga
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