Panicum virgatum (switchgrass): 120690285
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Entry
120690285 CDS
T07260
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120690285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120690285
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
120690285
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
ELL
DZR_2
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
120690285
NCBI-ProteinID:
XP_039828813
LinkDB
All DBs
Position
9N:37519967..37557239
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AA seq
529 aa
AA seq
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MGSADLVLKPSCEGCGNTSDLYGTGCKHTTLCSDCGKSMARSRARCLVCSLPITRLIREY
NVRANAVTDKTYSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPDNMREKYNRKPWI
LEDETGQYQYQGQMEGSQSATATYYLLMRHGKEFNAYPAGSWYNFSKIAQYKQLTLEETE
EKMNKRKTSATGYERWMMKAAANGPAAFGSDMKKLEATTGGEKESARPKKGKSNEEGNNS
DKGEEDEEEEAARKNRLGLTKKGLDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA
VDIDPEERADLAPEIPAPPEIKQDDEDNEEEGGLSKSGKELKKLLGRAAGLNESDADEDE
EEEQEDESSPVLAPKQKDQVKDEPVDNSPVKTTPSGHARSTPASKSKQKRKSGADDAKTS
GSAASKKAKVEWDTKASNIKEEAPSLAKPTSKSSASSKSGTNVIPVTEDEIRSVLLAVAP
VTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRDDKK
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgcggacctggtgctcaagccgtcgtgcgagggctgcggcaacacgtcggac
ctttatggcacgggatgcaagcacaccacgctctgcagcgactgcggcaagtccatggcg
cgctcccgcgcccgctgcctcgtctgctccttgcccatcaccaggcttatccgggaatat
aatgtccgagctaatgctgttacggataagacatactctattggaagatttgtcactggt
ttacctcctttctcgaagaagaagagtgctgagaacaagtggtctcttcataaggagggc
ctacaaggacgtcaaatacctgacaatatgcgggaaaaatacaaccggaaaccatggatt
ttggaagatgaaacgggccaatatcagtatcaaggtcaaatggaaggatcacagtcagct
acagctacatattatttgttaatgcggcatggcaaggaatttaatgcctatcctgctggc
tcttggtataacttcagtaaaattgcacagtacaaacaactgacactggaagagactgaa
gaaaagatgaataagaggaagaccagtgcaactggttatgaacgttggatgatgaaagca
gctgcaaatgggccagctgcctttggttcagacatgaagaaacttgaggccaccactggt
ggggaaaaagaaagtgctcgtcctaagaaaggaaaaagtaacgaggagggtaataattct
gataaaggtgaggaggatgaagaagaggaagcagcacgcaagaataggcttggactcact
aaaaaaggcttggatgatgatgaggaaggtggaaaagatctagactttgatttagatgat
gaaattgagaaaggtgatgactgggagcatgaagaaacatttactgatgatgatgaagct
gtagatatcgatccagaggaacgggcggatttagctcctgaaattcctgctccacctgaa
attaagcaggatgatgaagataatgaagaagaaggtggtctgagcaagtctggcaaggaa
ttaaaaaagctgcttggtcgtgctgctggactaaatgagtcagatgctgatgaggatgaa
gaagaagaacaggaagacgagtcatctccagtgctggctccaaagcagaaggatcaagtt
aaggatgaacctgtagataacagtccagttaaaacaacaccatcaggacatgcccgcagc
acacctgcatccaaatccaagcaaaagagaaaatcaggtgctgatgatgcgaaaacttct
ggcagtgcagcttcaaagaaagcaaaggtggaatgggatacgaaagcatcaaatatcaaa
gaggaagcaccttctttggcaaaacctacatcaaaatcctctgcttcgtcaaaaagtggg
acaaatgtaatacctgtcacagaggatgaaatcaggagtgttcttcttgctgtggctcca
gtcaccacacaagatctagtatccagattcaagtctaggcttcgaggtccagaggacaag
aatgcttttgctgaaattctgaagaaaatttcgaagatacaaaagacgaatggccacaac
tacgttgtccttagagacgacaagaagtga
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