Panicum virgatum (switchgrass): 120690437
Help
Entry
120690437 CDS
T07260
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120690437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120690437
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120690437
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120690437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
120690437
NCBI-ProteinID:
XP_039829011
LinkDB
All DBs
Position
9N:53381756..53407736
Genome browser
AA seq
2459 aa
AA seq
DB search
MIPFNPAVAAEVRALIQGADESTFDPIYRELCQLADCSPDGCVLLLQVCVDELLLNVGGA
KNPQPRHDLVATIFRYCLDKPYFRTSFCQAVSTIPVNDGFLETLSSELELSAAERVGVGL
VLSDSENPDLNLEGRKFTIAQIEELCSNHAHSVSNERIQEIVVFLLQTDGLSKHMDSFTN
IISLLNPKERPFYVPVSLQEANSNQANYSRHMELCIGSLDDDFDSLLSEIGKQISLPDII
TELGYGCASDIAHCKEILLHFEPLDNMAIAKLLGAVVCTRIGVGETQNTYSIFLSAFGNS
QTVDSSQLTAWNIDVLVDSINEIAPGTNWALVMENLDHVGFNIPDEAAFCLLMSIYSRAC
KDPFPLHAICGSLWKNTEGQLSFLKYAVASPNDTFTFAHCTKKMAFPDLGTLNQGNQVWY
CLDLLEVLCQLAELGYAKPVRTMLDYPLIHCPEVLLLGVSHINTTYNLIQHEVLSHVFPA
MLKNNTHSRLMNYLWHINPYLTLRGFVDAHSDINCLLRTVEICEDLKILATVLDSTPFAF
SIRLATAAFRKDHSNLEKWLTEKLSAQRATFLEECVKFLKEIMMSTNYSAAESSIQHPQV
TISTICQDSCPVFIKVLRSHSGQLLSNQLVDELRRVEAVYESRNHGDVGRDMPSPDVGED
IEAQANIYFQQMFAGQISVDATMQMLLRFKESKDKRELSIFNCMISNLFEEYKFFPKYPD
AQLKLAAVLFGSVIKHQLVAHLALGIALRGVLDALRKSIDSKMFMFGTIALEQFMDRVIE
WPQYCNHILQISHLRGTHAELVSAIEQALAKISLSQNEPNLGPMLPADQRGSGSQSIENI
ESSEASWQFINSTPTQLDRTISSFALQQRNQGFLGERSKGSTNTSQAKPMMPIGQPPLAS
TSSDLGANPKATVSLSSQASPHHSSSASGLSQPSGFARSRSSAPSGILRQPSYTTGFGAA
LNIETLVAAAERRDTPIEAPPSEVQDKIFFMINNISTSNMEAKAKEFNEVLQEHYYPWFA
QYMVMKRASIEPNFHDLYLKFFDKVNSKSLNKEIMKATYENCKVLLQSDLIKSSSEERSL
LKNLGSWLGKFTIGRNQTLRAKEIDPKILIVEAYERGLMIAVIPFTSKILEPCHSSIAYR
PPNPWTMGILSLLVEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQVVGN
PDFSNKDVSTSQTSASAEVSSGLVASMSHVELQPEISSTSRATSLPNMLNQYAAPIRLPS
NSMVEDDKVALIMPEQVTSHSLTQVAPPQTPSPSPFSLSQLMAAIPRADIYFRINEKLNS
LGPQLQYSKIMDVALDKAIKEIIGPVIQRSVTIASRTTKELILKDYAMESDDGTISRAAH
LMVGTLAGSLAHVTSKEPLRVALLSHLRSLVQNLISNSETTEQISQILVNDNLDLGCALT
ETVATRKAVDMIDADIKQPFSQLRRQKELQGSAYYDVSPYTQGLARVPDVLRPKPSGNLS
AVQRRVYEVKQHIMNFFTFSIFSIPSTCSLFHCQFQDFITVWHSQSSQNAVATTPATTVP
VALPDSSIVSVHGPILAPSASSSFSTLQFAPFTSSNQSTELIPDKTDSATTQLSSVSAQT
STTDSSGQVSGITNVAFVFPPMASGDLLAGELATTAKDIGAAIQASPAVAINRLGSAFPE
LLNSGDALDRYRLVWQKLETLIVNNGKDAEIQSVIAEVPDILLRCVSRDEAALAIAQKVF
RSLYENASKSTFVTWLLATLVAVRDVCKLVVKELTSWVIYSDEEKKFNLDIIIGLIRSDL
LNLGEYNVHLAKLLDGGRNKTATEFAISLIQTLVTQDFSSISELFNVVDALSKLATRPGS
PDSLQHLIEIARSSFNNNANYAASKDEKVIQARDKKVLSGRPLMNNEEDNADGIAFASAA
DFQDKVAVLFSEWCQICDHPAMGDSVYSHYIVQLQQNGLLKGDDVTDRFFFSLTELAIAH
SIVPEQTIAPTGLSQQSSPQQQISYFSIDSYSKLVASVVKSVDLGPNKGSLLHKILAVTA
RIIQKDAEEKKVSFNPRPYFRLFINWLNELTTSDLHHDGANFQVLTAFANTFHILQPLRV
PAWSFAWLELVSHRCFMPKLLMCNLQKGWPFFQRLLVDLFKFMEPYLRNAELGQPILLLY
KGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKI
DLLAEISIAPRIMTDVDGALKAKQMKAQVDEYLKRPEGSLFLTDLKQKLLLPQNEANVAG
TRYNVPLVNSLVLYVGMQAVQQLQQNKANASASAQINQSPQMDIFQIETATELFRNLVMT
MDTEGRYLILNAISNQLRYPNSHTHYFSFIILYLFAEATQEIVQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPRYSFWTRSFTHCAPEIEKLFESVARSCGGKGADDGIGLADGGH
NT seq
7380 nt
NT seq
+upstream
nt +downstream
nt
atgatccccttcaaccccgcggtcgccgcggaggtgcgcgccctgatccagggcgccgac
gagtccaccttcgaccccatctaccgcgagctctgccagcttgcggattgcagccctgat
gggtgcgttttgttgcttcaagtttgtgtggacgaattactgctgaatgttggtggggca
aagaacccccaacctagacatgatcttgtagccaccatcttcagatattgtttggataaa
ccctacttccgcaccagtttttgtcaagcagtgagcacaatacctgtcaatgatgggttc
cttgaaacactgtccagtgaacttgagctatccgcagctgagagggttggagttggactt
gttctgtcagattcggaaaatccagacttaaatctggaagggagaaagtttacaattgcc
caaattgaggagttatgctcaaatcatgcacactctgtatcaaatgaacgaattcaggag
attgtggtgtttcttctccagactgatggcctctcaaagcatatggactcttttactaac
attatatccctactaaatccgaaagagaggccattctatgttcctgtctcactccaggaa
gccaatagcaatcaagcaaattattcgagacatatggagctgtgcattggtagcttagat
gatgattttgattcccttctatccgaaattggaaaacagataagcctccccgatattatc
actgaactgggatatggatgtgcttctgatattgctcattgtaaagagatactattgcac
tttgagcctcttgataacatggcaatcgctaagttacttggtgcggttgtttgcactcgt
attggtgttggagagactcaaaacacatattcaatcttcctttctgcttttgggaacagc
caaacagttgattcatctcagttgactgcctggaatatagatgtccttgtggattcaatc
aatgaaattgcacctggaactaactgggcgcttgttatggaaaatcttgatcatgtgggt
tttaatatccctgatgaagcagctttttgtttattgatgtctatatattctcgggcttgc
aaggatccattcccacttcatgcaatctgtggatcattgtggaagaatacagaaggacaa
ctgtcattcttgaaatatgcagtggcttcgcctaatgatacatttacttttgcacattgt
accaagaagatggcttttccagacttgggaactcttaaccaaggcaatcaggtttggtac
tgcctagaccttcttgaggtgttatgtcagcttgctgaacttggctatgcaaaaccagta
cgaacaatgcttgactatcccctgattcattgtcctgaagtgttgcttctgggtgttagc
cacatcaatactacatataatctcattcaacatgaagtattgtctcatgtttttcctgct
atgttaaagaacaacacgcacagccgtcttatgaactacctctggcatatcaacccttac
cttactcttcgaggatttgttgatgctcattctgatataaattgtcttctgagaaccgtt
gagatatgtgaagacctaaagatcctagctactgtccttgattccaccccatttgctttt
agcattagacttgctacagctgcctttaggaaagatcatagtaatttggagaaatggctg
actgaaaagttgagtgcacaaagagcaacttttcttgaggaatgtgttaagttcttgaaa
gaaattatgatgagcacaaattatagtgctgcggaaagttccattcaacatcctcaagtt
actatttcaactatctgccaggactcttgccctgtatttataaaggttcttcgttctcac
tcggggcagctgttgtctaaccaactagtggatgaacttaggagagttgaagcggtgtac
gaatcaaggaatcatggtgatgtaggaagggacatgccctctcctgatgtaggggaagac
attgaggctcaggcaaatatttattttcaacagatgtttgctggacagataagcgttgat
gctacgatgcagatgcttttacgcttcaaagaatctaaagacaagagggagctatcaatt
ttcaactgcatgatctcaaatttgtttgaagaatacaagttcttcccaaagtatccagat
gcacaacttaaattagctgctgtgcttttcggctctgtcataaagcatcaacttgtggcc
caccttgcactcggaatcgctctacgcggtgttctggatgccctgcgtaaatctattgat
tcgaagatgtttatgtttggtacaatagcgttggagcagtttatggatcgagtaattgag
tggccacagtattgcaaccatatactgcagatttcacatcttcgcggaacacatgctgaa
ttagtttctgctattgagcaagcacttgccaagatatcattgagtcaaaatgagccgaat
ttggggcctatgcttcctgcggatcagcggggttctggttcacagtctatcgaaaacata
gagtcttcggaagcatcatggcagttcataaattcaacaccaacacaactagataggacg
atttcttcctttgcactacaacagaggaaccaaggtttcctaggggagaggtccaaaggc
tcaactaatactagtcaagcaaaacccatgatgcctattggccagccacctctcgcttca
acttctagtgatctgggtgctaatccaaaggccactgtgtcattgtcctctcaagcttct
ccacatcattctagctctgcgtcaggtctttcacaaccttctggttttgcacgatctaga
agttcagctccatcaggcatccttcgacaaccttcatacactacaggttttggagctgct
ttaaatattgagactcttgttgctgcagctgaacgaagagatacaccaatcgaggctcca
ccatctgaagttcaagacaaaattttcttcatgatcaataatatttccacttccaatatg
gaggctaaagcaaaagagtttaatgaggttttacaggagcactattatccttggtttgcg
caatacatggttatgaaaagggctagcatcgaaccaaattttcatgacttgtatttgaag
ttcttcgataaggttaactcaaaatccttgaataaggaaataatgaaagctacatatgag
aactgcaaggtcttgttacaatcagatcttatcaaatctagttctgaagagcgttctttg
ctaaaaaatcttggtagctggcttggaaaattcactataggaaggaatcaaacattacga
gcaaaggaaattgacccaaaaatcttaatagttgaggcttatgaaaggggtttgatgatt
gcggtcattccgtttacttcaaagattcttgagccttgccattcaagtatagcatatcgt
cctccaaatccttggacaatgggtattcttagtctccttgttgaaatatataacctacca
aatctcaaaatgaacctgaagtttgacattgaggtcttgtttaagaatctcagtgttgac
atgaaagatgtaaaaccatcttctcttcttaaagatcggattcgtcaagttgtgggaaat
ccagatttttcaaataaagatgttagtacatctcaaacatcggcatctgcagaggtctct
tctgggctcgttgcttcaatgagccatgtggaactacaacctgagattagtagcacctca
cgtgccacaagccttccaaatatgcttaaccagtatgcagcgcctattcgcctaccttcc
aacagcatggttgaagatgataaggttgctttaatcatgcctgaacaggttacctctcac
agcctgacccaggttgcaccacctcaaacgccatcaccatccccgttttctctgagtcag
cttatggcagcaatcccacgtgccgatatatattttagaatcaacgaaaagcttaactct
cttggcccacagttgcagtatagcaaaatcatggatgtggctttggataaggctattaag
gagattataggtcctgtcattcaaagaagtgtaacgatagctagccgaaccaccaaggag
cttattctaaaggattatgcaatggaatctgatgatggtaccatatctcgcgctgcacat
ttgatggttggtacattagcaggaagtttagcccatgttacttccaaggagccccttcgc
gttgctttgttatctcatcttcgaagtcttgttcagaacctgattagtaacagtgaaacc
accgaacaaattagtcaaattcttgttaatgataatctggatcttggatgtgctctaaca
gagactgtggcaacacgcaaggccgttgatatgattgatgcagacatcaagcaacctttt
tcgcaactcaggagacaaaaggaactacagggctccgcgtattatgatgtttccccttat
actcaaggtcttgcacgtgtccccgatgtacttcgtccaaagccttctggtaacttgtct
gctgtccaacggcgagtatatgaggtgaagcagcatatcatgaatttcttcacattcagc
attttttctattccaagcacctgcagcttatttcattgtcaatttcaggacttcatcact
gtttggcatagccagagcagtcaaaatgctgtggcaacaactcctgctacaaccgtgcct
gttgcccttcctgattccagtattgtttcagttcatggcccaattttagcaccatcagcc
tccagtagtttctcaactctccaatttgccccattcacatcttcaaatcagtcaacagaa
ctaatacctgacaagacggattctgctactacacagctttctagtgtttctgctcaaact
agcacaaccgacagttctggtcaagtttctggaatcacaaatgttgcatttgtttttccg
cctatggcctctggcgaccttctagcgggagaattagcaactacagctaaagatataggt
gctgcaatacaggcttcgcccgcagttgctattaatcgtctaggatctgcttttccggaa
ctgctgaatagtggtgatgcgctagacagatatcggcttgtttggcagaagctggaaacc
ttgatcgtgaataatgggaaagatgcagaaattcagtctgttattgcggaagttcctgat
atcttgctcagatgtgtcagtcgggatgaagctgcattagcaattgcacagaaggttttc
agaagtttatatgaaaatgcgtcaaagagcacttttgtcacatggcttctagcaaccctt
gttgcagtgcgtgatgtttgcaaacttgttgtgaaagagttaacaagctgggtaatatat
tcagatgaagagaagaagtttaacttggacataattattggacttattcgttctgatctg
cttaatcttggggagtacaatgttcatttggcaaagcttctagatggtggaagaaataag
actgcaacggaatttgcaatatcactcatccagacattggttacccaagatttcagtagc
atctccgagctttttaatgttgttgatgccttatcgaagcttgcaacgaggcctgggtca
cctgattccttgcagcacttgattgaaattgcaaggagttccttcaacaacaatgctaat
tatgctgcttcgaaggatgaaaaggttattcaggcaagagataaaaaggttctatctggt
cgtcctttaatgaataacgaagaagataatgctgatggcattgcttttgctagtgctgct
gattttcaggacaaggttgcagtcttgttttctgagtggtgtcaaatatgtgatcatcct
gctatgggtgattcagtgtatagtcattacattgtgcagttacaacagaacggcttgctg
aagggagatgatgtgactgaccgtttcttctttagtctgacggaacttgctatcgcccac
tctatagtgcctgagcaaaccattgctcctactggactatctcagcaatcgtccccgcaa
cagcagatttcatatttttcaattgattcatattcaaaacttgtggcttcagttgtcaaa
tctgtggatttagggccaaataaaggcagtcttctccataagattctcgctgtgacagct
agaatcattcagaaagatgccgaagaaaagaaagtctctttcaatcctcggccatatttt
cgtttgtttataaattggctaaatgagcttactacttctgaccttcaccatgacggcgct
aattttcaggttttgactgcatttgcaaatacgttccatattctgcaacccttgagagtt
ccagcttggagttttgcttggcttgagttggtgagccaccgatgcttcatgccaaagtta
ttgatgtgcaatttgcaaaaaggctggccattttttcagaggttgcttgttgatttgttc
aaattcatggagccatacttaagaaatgctgaattgggacagcctattcttcttttgtac
aaaggaacattaagagtgctgcttgtgctactacatgatttccctgaatttctctgtgac
tatcacttcagtttctgtgatgtgattcccccaagctgtattcaaatgcgtaatgttatt
cttagtgcctttccacgcaatatgagacttccagatccctccactcctaacttaaagatt
gatctgctagcggagatttcaatagctcctcgaatcatgactgatgtggatggtgctttg
aaggcaaagcaaatgaaggctcaggttgatgaatacctaaagagaccagaaggatccctc
tttttaactgatctaaagcagaagttgttgctaccacaaaatgaggcaaatgtcgcaggg
actcgttacaatgttcctctagttaattcacttgtcctttacgttggtatgcaggctgtg
caacagttgcagcaaaacaaggcgaatgcatcggcatcagcccaaattaaccaaagtcct
caaatggatatattccagattgaaacagctactgagctgttcagaaaccttgtaatgact
atggacacagaaggtcgctaccttattctcaatgcgatttctaaccagcttcgctatcca
aatagccatacccactacttttccttcatcattctgtacttgtttgctgaagcaacccag
gaaattgtccaggagcaaataactagagttcttttggaaaggttaattgtcaaccgtcct
catccttggggattacttattactttcattgagctgataaagaacccacgctacagcttt
tggactagatcctttacacactgtgcgcccgagatagagaagctattcgagtcagttgca
aggtcctgtggagggaaaggcgcggatgatggaattggtctcgcagatggtggccactag
DBGET
integrated database retrieval system
