Panicum virgatum (switchgrass): 120690457
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Entry
120690457 CDS
T07260
Name
(RefSeq) RNA helicase aquarius-like isoform X1
KO
K12874
intron-binding protein aquarius
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120690457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120690457
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19-related factors
120690457
Complex C
120690457
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
AAA_30
AAA_22
ResIII
UvrD-helicase
UvrD_C_2
SLFN-g3_helicase
AAA
AAA_16
Motif
Other DBs
NCBI-GeneID:
120690457
NCBI-ProteinID:
XP_039829041
LinkDB
All DBs
Position
9N:complement(61329822..61339875)
Genome browser
AA seq
1589 aa
AA seq
DB search
MPKVFGVGVFEFRHPRAAEYPLPADAAPATTAAPDKVPASTGGASITLLDIQRDRLTRVA
AEHWSTPAAASAFDADLVREIYATELRVEGRGRKTVPLHRVMILEVSQYLENYLWPHFDP
ADASFEHVMSIILMVNEKFRENVAAWTCFHDRKDAFKGFLWRVLKLKEEERTLNMAEKTN
YLLFMINAFQSLEDELLRETILQLVSLKLWNTLSFGRLQMELCLNPELIKKWTKIKRREA
KEAKKADQPANPSEMLENKFLRNLIEEFLEILDSKVILSSQDGGEESVLNESLSGQVDDS
CVLYCERFMEFLIDMLSQLPTRRFLRPLVADVAVVAKCHLSALYTHEKGRLFAQLVDLLQ
FYEGFEINDHSGTQLGDDDVLQAHYSRFQAFQLLAFKQVPKLRDFALSSIGSLHKRADLT
KKLLVLSDMELQDLVCNKLKLISEKDPCSGRRDFLIEVLVAFFEKRQSQKDAVNALPLYP
NEHIMWDESLVPSINYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEA
VPHLHSYINNEGETAFRGWSRMAVPIKEFKITEVKQPNIGEVKPSTVTADVTFSISSYRH
QIKSEWDALKEHDVLFLLSIRPSFEPLSPEEAAKSTVPERLGLQYVRGCEVIEIRDEEGT
LMNDFTGRIKREEWKPPKGDIRTVRIALDTAQYHIDVTETAEKGAENVSGTFNILMRRKP
KENNFKAILESIRDLMNETCVVPEWLHNIFLGYGNPSAAQWINMPDLLEVIDFKDTYLDA
NHVQQSFPDYQITFINSDGTENLHPSPPFKIRLSKKMRESSHALPGNVNSSLAVKSNNNM
ADGESQKEKLIVETYVPADPGPYPQDKPKQNSVRFTPTQIGAIISGVQPGLTMVVGPPGT
GKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELA
TDLDFSRQGRVNAMLVRRLELLGEVSKLARSLRLPEDVGYTCETAAYFWLLHVYARWEQF
LAACAQNQDNPSFVKDRFPFSEFFSDTPQPIFTGESFDKDMHAAKGCFKHLSTIFQELEE
CRAFELLKSTVERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKFDNLLMEESAQILEI
ETFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPY
IELNAQGRARPSIAKLYNWRYRELGDLPYVHEQAIFHKANAGFSFEYQLVDVPDYKGKGE
SAPSPWFYQNEGEAEYIVSVYIYMRLIGYPANKISILTTYNGQKLLIRDVINKRCKPYNI
EPPNKVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLIVAMSRARLGLYVFCRRSLFE
QCYELQPTFQLLLQRPDKLALNLEECTPFTERPLGETGNIHYVTGIEDIGHLVKFRLEHL
RQMQYMQYYAPPPNELPPAVPENIAAVIPSENGSVPNQPNEHMAVEENGGGASDTMVGNM
MEEDAVEAKDETMQEGNKTGEGNGDGDVAAKDKIEEDAVEAKDETMQEGNKTGEGNGDVA
AKDKDYEHADANDKMEEGDAMSKDKIEEE
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggtctttggcgtcggcgtcttcgagttccggcacccccgcgcggcggagtac
cctctccccgcggacgccgcccccgccacgaccgcggcgcccgacaaggtccccgcgtcc
accggcggcgcctccatcaccctcctcgacatccagcgggaccgactcacccgcgtcgcc
gccgagcactggagcacgcccgccgccgcctcggccttcgatgcggacctcgtccgggag
atctacgccacggagctccgggtcgagggccgcgggcggaagaccgtgccgctgcaccgc
gtcatgatcctcgaggtcagccagtacctcgagaactacctgtggccgcacttcgacccg
gcggacgcctccttcgagcacgtcatgtccatcatcctcatggttaacgagaagtttcgg
gagaatgtggcggcgtggacatgcttccatgaccgtaaggatgctttcaaggggttcctg
tggcgggttctcaagctcaaggaagaggaaaggacccttaatatggcagagaaaacaaat
tacctccttttcatgataaatgcatttcagagtttggaggatgagcttctccgggaaact
atacttcagttagtaagcctaaagctatggaatactctttcttttggacgacttcagatg
gaactctgccttaaccctgaattgattaagaagtggaccaaaatcaaaagaagggaggca
aaagaagcaaaaaaggctgaccaacctgccaatccttctgaaatgcttgagaataaattc
cttaggaatctaattgaagaattcttggagattctcgattcaaaggtcatattatcaagt
caagatggtggtgaagaatctgtattgaatgagtcactcagtgggcaggtcgatgattct
tgcgtcctatattgtgagagatttatggaatttctgattgacatgttgagccagcttcct
actagacgatttttgaggcccctagttgctgatgttgctgtcgttgctaagtgccactta
agtgcactctatactcatgaaaagggacgcctttttgcacagttggttgacttactgcag
ttttatgaaggctttgagattaatgatcattctggaacacagcttggtgatgatgatgtc
ctgcaagctcattattctcgtttccaagcttttcagctgctagcatttaagcaagtgcct
aagttgcgagattttgccttgtctagtattggttcactacataagcgagctgacttaaca
aaaaagctgcttgtcttgtcagacatggaattgcaagatctggtttgtaacaagctcaag
ttaatctcagagaaagacccatgcagtggaaggcgtgattttcttatcgaagtcctagtt
gctttttttgagaagcggcaatcccaaaaagatgcagtaaatgcacttcctctttatcca
aatgagcatatcatgtgggatgaaagccttgttcctagcattaattactcgggggaaggc
tgtcttgccctcccaaaactcaatctccaattcctgacacttcatgattatttgttaaga
aatttcaacctgtttcgtcttgaatcaacctatgaaattcgtgaagacattcaggaagct
gttcctcatttacattcttatatcaacaatgagggagagacagccttccgtggatggtcc
agaatggctgttccgatcaaggaatttaagattacagaagtgaagcagccaaacattggg
gaagttaagccctctactgtaactgctgatgttactttcagcatatcaagctacaggcat
cagataaaatctgaatgggatgctctaaaggagcatgatgttctatttttgctgtccatc
cgcccttcttttgagcctcttagccctgaagaagctgcaaaatcaactgtgccagaaagg
ctaggattgcaatatgtacgtggatgtgaggtcattgaaattcgtgatgaggaaggaaca
ctcatgaatgacttcacaggaaggataaagcgagaagaatggaaaccacccaagggtgac
attcgtactgtccgtattgccctagatactgcacagtaccacattgatgttactgaaaca
gcagagaagggtgcagaaaacgtgtctggtacatttaatattctaatgagaaggaaaccc
aaggagaataatttcaaagcgatcttggaatctatacgtgatctaatgaatgaaacatgt
gtagttccagaatggctgcataacatattcttgggttatggaaatccttctgccgcacag
tggataaatatgcctgatcttctggaagttatagatttcaaggacacttatcttgatgct
aaccatgtacagcaaagttttccagattaccagattacatttatcaactctgatggtaca
gaaaacctgcatccaagccctccttttaagattaggttgtccaagaaaatgagggaaagc
agtcatgccctacccggcaatgtgaactccagtttggctgttaagagcaacaataatatg
gctgatggtgagtctcagaaagagaaactaattgttgagacttacgttccagcagatcct
gggccatatcctcaagataaacctaaacagaactcagttaggttcacacccacccagatc
ggtgctataatatccggcgttcaacccgggttgacaatggttgttggtcctcctggtacg
gggaaaacagatacagctgtgcagatattaaatgttctatatcataactgtccttcacaa
agaacactgatcataacccattccaatcaagctctgaatgacttgtttgagaagataatg
cagagggatgtgcctgctaggtaccttcttcgccttggtcagggtgagcaagagcttgcc
actgatcttgattttagccgtcaaggtcgtgtcaatgctatgcttgtccgacggctagag
ctgctaggtgaagtttctaaattggcgagatctcttcgtcttccagaagatgtgggttac
acatgtgaaactgctgcttatttttggctattacatgtttatgcccgttgggaacaattc
ttagctgcctgtgcacagaatcaagataatccctcttttgtcaaagaccgcttcccattt
tcggagtttttttcagatactccacagcctatttttaccggtgagtcttttgataaagat
atgcatgcagccaagggttgtttcaaacatctctctacgatattccaagagctggaagag
tgcagggcgttcgaactacttaagtcaacagtggagagagcaaattatctaatgacgaaa
caggcaaagattgtcgccatgacttgtactcatgcagcattaaagaggcgagactttctt
caattaggtttcaaatttgacaatttattgatggaagaaagtgcgcagatattggagata
gaaacttttatccctatgctgctgcaacgacaggaagatggctatgctcgccttaaacgt
tgcattttaattggtgatcatcatcagttaccccctgtggtgaagaatatggcttttcag
aagtacagccacatggaccagagtctgtttactaggttcgttcgtcttggtgttccttac
attgagctcaatgctcagggtcgtgcaagacctagtattgctaaactttataactggaga
tacagagagctgggagatctgccttatgtgcatgagcaagcgatcttccataaagctaat
gctgggttctcctttgagtatcagttggtcgatgttcctgactataaaggcaaaggcgag
tctgccccctctccttggttctaccagaatgaaggggaggctgagtatattgtcagtgta
tatatctacatgcgcctgattggctaccctgccaataagatttcaatattaacgacctac
aatggtcagaagcttcttattcgtgatgttataaacaaaagatgcaagccatataatatt
gagccacctaacaaggttaccactgtggacaagttccagggccagcaaaatgatttcatt
ttactctctcttgtccggacccgttttgttggccatctccgtgatgttagaagacttatc
gtggctatgtcccgtgctcgtctgggcttgtatgtgttctgccgccgttcgctgtttgaa
cagtgttacgaattgcagccaacattccagcttctcctccagagacctgataaacttgcc
ttgaatcttgaggagtgcacaccttttacagagcgacctttgggggaaactggaaacatc
cattatgttactggtattgaagacattggtcatctggtgaagttcagactggaacatctt
cgtcagatgcaatacatgcagtattatgctcctccgccaaatgagctacctccagcagtg
ccagaaaatattgctgctgtaatcccttcagaaaatggcagtgttccgaatcagccaaat
gagcacatggcagtggaagaaaatggtggtggtgcaagtgacaccatggttggtaacatg
atggaggaagatgctgttgaagcgaaagatgaaacaatgcaggaaggaaacaagacgggt
gaagggaatggtgatggtgatgtggctgcgaaggacaagattgaggaagatgctgttgaa
gcgaaagatgaaacaatgcaggaaggaaacaagacgggtgaagggaatggtgatgtggct
gcgaaggacaaggactatgaacatgctgatgcaaatgacaagatggaggaaggagatgcc
atgtcgaaggacaagatcgaggaagagtga
DBGET
integrated database retrieval system
